TCONS_00041645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041645
Unique NameTCONS_00041645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041645 ID=TCONS_00041645|Name=TCONS_00041645|organism=Clytia hemisphaerica|type=transcript|length=948bp
TTATTTTCATTATTAACAGAACATCACACTCAAATCAACATCAATATGAT
ATGATGCCCAAAAGACCACGAAACACACCTAACCCACTTTGTACCTCATC
TTCTTGCGTTGACGAATGCAGCCAAGACGTTTTGACCTGCTCAAAATGCA
ACAGAAGCGTGTATTTCATCTGCACCAGACTTCCACCCTACATGATAACG
GTCTGCAAGGATGGAAGACGAACTGCCTGCAAATATATATGTCCAAACTG
CGTCACTGTCTCAAGAGATCTACTGGCAATAGTTCCTTCGCCTGGATCGC
AACCTTCATAAAAAACGGCTGCCCAACTGTCGAAGTTAAAAGAAACTTTC
AAAGAGAATGAAGAAACATTTTTACGGGCAGTGCCCCCCCCCAGCGTACA
ATTTTTGGGGGGGTGCCAAGAGGCAAGAGGAGGAAAAAGGCGACTCTGAC
TTCTAATCTCAGCGTCCCTTTGCTTTTTAGACCACCTTGAAATTAGTAgg
ttttagcaaaaaaatagaaaaaatattaaaaagctTCGCTTTGctcactt
ttaacttttttttaagatattaGAACTTGTAATAGGGCCAGCCAAAATCC
CAACTTTCACAAATTGCCTCCCAAGTTTGGCCCAATTTTGGTCAAACCTT
AGCAGACTAAGAGGaaggaaaaattggaaaattctgTGAATTTTAAGACC
CTCTAAACCAGCTTGAAAATTGTTCACTTTGAAGTTTTCTATATACTGTA
ACTCGACAATTCTGgatcttaaaaaaaattggtatcggAAAACAAAAGTT
GGCAGTATCAGGCAAATATGAAATAAGTATCGGTCAACGGTCAATATCCG
ACTGCAAAAAGCCTTTTGACCAACTTAAAACCATTTGTGTCGGTCAAGAT
GTCCGaatgaaaagaagaataaaccattaacttgagTTGAAAATAAAN
Run BLAST on NCBI

protein sequence of TCONS_00041645-protein

>TCONS_00041645-protein ID=TCONS_00041645-protein|Name=TCONS_00041645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
IFIINRTSHSNQHQYDMMPKRPRNTPNPLCTSSSCVDECSQDVLTCSKCN
RSVYFICTRLPPYMITVCKDGRRTACKYICPNCVTVSRDLLAIVPSPGSQ
PS
Run BLAST on NCBI

transcript from alignment at sc0002951:14652..15599

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041645 ID=TCONS_00041645|Name=TCONS_00041645|organism=Clytia hemisphaerica|type=transcript|length=948bp|location=Sequence derived from alignment at sc0002951:14652..15599 (Clytia hemisphaerica)
NTTTATTTTCAActcaagttaatggtttattcttcttttcattCGGACAT
CTTGACCGACACAAATGGTTTTAAGTTGGTCAAAAGGCTTTTTGCAGTCG
GATATTGACCGTTGACCGATACTTATTTCATATTTGCCTGATACTGCCAA
CTTTTGTTTTccgataccaattttttttaagatcCAGAATTGTCGAGTTA
CAGTATATAGAAAACTTCAAAGTGAACAATTTTCAAGCTGGTTTAGAGGG
TCTTAAAATTCAcagaattttccaatttttccttCCTCTTAGTCTGCTAA
GGTTTGACCAAAATTGGGCCAAACTTGGGAGGCAATTTGTGAAAGTTGGG
ATTTTGGCTGGCCCTATTACAAGTTCtaatatcttaaaaaaaagttaaaa
gtgagCAAAGCGAagctttttaatattttttctatttttttgctaaaacc
TACTAATTTCAAGGTGGTCTAAAAAGCAAAGGGACGCTGAGATTAGAAGT
CAGAGTCGCCTTTTTCCTCCTCTTGCCTCTTGGCACCCCCCCAAAAATTG
TACGCTGGGGGGGGGCACTGCCCGTAAAAATGTTTCTTCATTCTCTTTGA
AAGTTTCTTTTAACTTCGACAGTTGGGCAGCCGTTTTTTATGAAGGTTGC
GATCCAGGCGAAGGAACTATTGCCAGTAGATCTCTTGAGACAGTGACGCA
GTTTGGACATATATATTTGCAGGCAGTTCGTCTTCCATCCTTGCAGACCG
TTATCATGTAGGGTGGAAGTCTGGTGCAGATGAAATACACGCTTCTGTTG
CATTTTGAGCAGGTCAAAACGTCTTGGCTGCATTCGTCAACGCAAGAAGA
TGAGGTACAAAGTGGGTTAGGTGTGTTTCGTGGTCTTTTGGGCATCATAT
CATATTGATGTTGATTTGAGTGTGATGTTCTGTTAATAATGAAAATAA

Coding sequence (CDS) from alignment at sc0002951:14652..15599

>TCONS_00041645 ID=TCONS_00041645|Name=TCONS_00041645|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0002951:14652..15599 (Clytia hemisphaerica)
TTATGAAGGTTGCGATCCAGGCGAAGGAACTATTGCCAGTAGATCTCTTG
AGACAGTGACGCAGTTTGGACATATATATTTGCAGGCAGTTCGTCTTCCA
TCCTTGCAGACCGTTATCATGTAGGGTGGAAGTCTGGTGCAGATGAAATA
CACGCTTCTGTTGCATTTTGAGCAGGTCAAAACGTCTTGGCTGCATTCGT
CAACGCAAGAAGATGAGGTACAAAGTGGGTTAGGTGTGTTTCGTGGTCTT
TTGGGCATCATATCATATTGATGTTGATTTGAGTGTGATGTTCTGTTAAT
AATGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025578XLOC_025578Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041645-proteinTCONS_00041645-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041645-exon-sc0002951-1491911889:14652..15599TCONS_00041645-exon-sc0002951-1491911889:14652..15599Clytia hemisphaericaexon
TCONS_00041645-exon-sc0002951-1510915933:14652..15599TCONS_00041645-exon-sc0002951-1510915933:14652..15599Clytia hemisphaericaexon
TCONS_00041645-exon-sc0002951-1575043694:14652..15599TCONS_00041645-exon-sc0002951-1575043694:14652..15599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002951supercontigsc0002951:14652..15599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.262572	0.48155	0.419147	0.691336	1.79911	1.36787	1.34667	1.81654	1.36995	1.05909	2.41328	1.8494	0.728956	1.21894	0.298105	0.49415	0.373611	0.281667	1.42909	0.675798	1.38109	1.8231	0.244055	0.350306	0.723337	0.950236	1.83576	1.04078	0.613581	1.01178
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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