TCONS_00041643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041643
Unique NameTCONS_00041643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041643 ID=TCONS_00041643|Name=TCONS_00041643|organism=Clytia hemisphaerica|type=transcript|length=314bp
TCTGCTTATCCTGCTTCGAGCGATTGGGAAAATGTTTTACTAACCATTAA
ACAGAGAAAGACTAAAAGATTGGCTTGTGATGTGGAAATCTTAAAATTAg
aatgtttcaaaaagtttggcATGAACGACTTGTCTTTTGAAATGGCTGTT
GACAGATTAATGCAGATGGGTTGCATCAAACAAATCACAAGGagtggtaa
aaaaactttttcaatgttGTCTGCTGATGTTCCAGCTTTTGAGACTTTAA
AAAATAGTCAAAGTATCGAAAACACTCTCACAGACTTTATGGACTTTAAG
AAGTACGTGACAGA
Run BLAST on NCBI

protein sequence of TCONS_00041643-protein

>TCONS_00041643-protein ID=TCONS_00041643-protein|Name=TCONS_00041643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
SAYPASSDWENVLLTIKQRKTKRLACDVEILKLECFKKFGMNDLSFEMAV
DRLMQMGCIKQITRSGKKTFSMLSADVPAFETLKNSQSIENTLTDFMDFK
KYVT
Run BLAST on NCBI

transcript from alignment at sc0002949:10360..10673

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041643 ID=TCONS_00041643|Name=TCONS_00041643|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0002949:10360..10673 (Clytia hemisphaerica)
TCTGTCACGTACTTCTTAAAGTCCATAAAGTCTGTGAGAGTGTTTTCGAT
ACTTTGACTATTTTTTAAAGTCTCAAAAGCTGGAACATCAGCAGACaaca
ttgaaaaagtttttttaccactCCTTGTGATTTGTTTGATGCAACCCATC
TGCATTAATCTGTCAACAGCCATTTCAAAAGACAAGTCGTTCATgccaaa
ctttttgaaacattcTAATTTTAAGATTTCCACATCACAAGCCAATCTTT
TAGTCTTTCTCTGTTTAATGGTTAGTAAAACATTTTCCCAATCGCTCGAA
GCAGGATAAGCAGA

Coding sequence (CDS) from alignment at sc0002949:10360..10673

>TCONS_00041643 ID=TCONS_00041643|Name=TCONS_00041643|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0002949:10360..10673 (Clytia hemisphaerica)
TGTCACGTACTTCTTAAAGTCCATAAAGTCTGTGAGAGTGTTTTCGATAC
TTTGACTATTTTTTAAAGTCTCAAAAGCTGGAACATCAGCAGACaacatt
gaaaaagtttttttaccactCCTTGTGATTTGTTTGATGCAACCCATCTG
CATTAATCTGTCAACAGCCATTTCAAAAGACAAGTCGTTCATgccaaact
ttttgaaacattcTAATTTTAAGATTTCCACATCACAAGCCAATCTTTTA
GTCTTTCTCTGTTTAATGGTTAGTAAAACATTTTCCCAATCGCTCGAAGC
AGGATAAGCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025576XLOC_025576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041643-exon-sc0002949-1491911889:10360..10673TCONS_00041643-exon-sc0002949-1491911889:10360..10673Clytia hemisphaericaexon
TCONS_00041643-exon-sc0002949-1510915933:10360..10673TCONS_00041643-exon-sc0002949-1510915933:10360..10673Clytia hemisphaericaexon
TCONS_00041643-exon-sc0002949-1575043694:10360..10673TCONS_00041643-exon-sc0002949-1575043694:10360..10673Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041643-proteinTCONS_00041643-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002949supercontigsc0002949:10360..10673 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.07076	1.52987	0	0.455534	0.359969	0	0.406575	0.569305	0	0	0	0	0	0	0.205842	0	0.519824	0.359083	1.50302	0	0.47791	0	0.352119	0	0	0.926365	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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