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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041609 ID=TCONS_00041609|Name=TCONS_00041609|organism=Clytia hemisphaerica|type=transcript|length=3148bp
CAGGGtactatttgaaactatgacacaagtaccctatgtgcttcactgtg
cgaactcactgcgattgaccgaggccgctccgaagagacgcctcacctga
cggaaacttacagcttgggccgacaaaaaagttttttgggctGACAAGGA
ATTTCTTTGGCCGAAcaagaaagattttttggccgacaaagaaagatttt
ttggccgaacaaaaaaatttttttggccgttagaaaaaatttttgggccg
acaaaaaaattttttgggcctgaCAAAAGATTTGGACCAAATACCCCCGA
GACTACCACTACACACCCCACACGCCCTATATCTGCACACCGCCCCGACT
CTACTATATCTGAACACCGCATCGACTCTACTATACATCTAAGCTACATC
TCAAGTACCTTGAGTGACCCCCCGGGGAGATACCAGAAAACCGTTAAACT
AATCCCACCCTACACCACCTCCCGCAAACTACCGCCACCATACTACACGG
AAACTCAAACTTGGCACCCATCAAGACACACTACCCTACTTAAAAATATA
GAAAAACATCATCCACTACTCATCTATCTTAACTCTACCACCACCCTTAC
CACCCACGCTCGAACCACCCCCGTACACATTTATCTCACGGCAAACCACC
CCACAGCACATATTAACAAAAAATGAAACCAATCCAAACAATGGACTACG
TCATTAGCACAACAAAAGCTTTCCACCATGAGAGGGCCCAAACAAAAGGG
CTGTCTATGGCAACAACAAACGCGCTATCGAAGCGAACCAATCACAATAA
ACCTGAAACAAGAAAAACCAATCATGACCCGGAGATAAGAACAACCAATC
AGAAACAGAAAAAACCAAACACGTGACCATTGCACACAACAACTGCACAA
AAAGAAACACGCGAACCAAAAACATCCTTTTTGAAGATAAACCACACTGA
CAAGATGAGCTCACAAGATCTATTTGAATCTGGAAATGAGGAAAACATCT
CACCACCAATGACCACAGCCAAGACCACCAAACCAACCAAGGAAAACCTC
TCACCACCAATGACCACAACCAAGACCACAACCAACGCCGCAAAACGAAC
CGCGAGAACACTGGAATACAAAGATCCCCCAGAACAAAACATAGACCCGT
TCCTCGAGGAAATCGACAGAACAATCACACTAACACAACGTGCAAACACA
GAGAGACAACAACAGAAGGTATCACACCAAGCCGTACAGGAATATAAATG
GCATACACTACAAGCAATAAGCACCAACAATCAAATTATGCAACTAACCA
GACACAGGAACAAAGAAACCGTACCGATAGGCTTAATACCAACTGTGACA
TCAAAGGTCACGAACCAACTCAACACTGACCACCGAAAACAATGGGACAA
AATACTGACAAAAGCAGCACATGAACTAAGAGACGTCCTAATCGAACACC
ACACCTCAAAGAAGGAATACCACAAGGGACTTAGAGAACTGGCAAGAGAG
AAACTTTCTGACGAGAACTTAAAAACGGTAAATGAGGAGATCCAAAAACA
AAGACGGACACCACCGCCCACCGAAAATAAACGCCCCAACAATAAGAGAA
GACACAGCCACCACGACGACCAACAACAAGAGTCAAAAAAGTGATTTATA
ATGTATATAATGTAAATAGTAAAACTCATAAACAAGAAAAAGATATACCT
GCAAACAAAAAAACCAAAACGGATACCTTCCAAAAATACCCACAACTAGA
CATAAACCACTACCACAAGAAAACAACACAAAAAACAAAAAATACTACTG
TCAAAAACTTTTCGAACATGACGCTAAAAAAAGTAGAATTGAACCTGTTA
GATAAAGGACTAACTTTTGTACCAACACCAAAAACAACACACATAAAAAA
ACATATACAACACGCCCTAAGAACCTTTACAAATAGAATATTCACTAAAT
ATTTTTTCTCGAAAAAGCCTTCAAAACCAAAACTTTTATATAGAACTAAA
CAATGGAAACCACCAATCCCCAACAATAGAACATTAAAAGCATACATTAG
AAAAACTAAATTTGAAATCAACAGATTTATACAAAAAAACAAAAACAGAA
GCCTAAAACAAAACTTGAACCCGCACGAGACTAAAACATTAAAAAGATTA
TCCCAAAACAAAAACATCGAAATAAAACCAGCTGATAAGGGTGGAGCCCT
GGTCATCATGAACAAGACCTGCTATAAATCCAAAGTTTTCGACCATCTTA
ACGATGAAAAATCATATGAGCTAATAAAGGAAGAACAAACCTCAGACCTA
AAAACCAACATTGAAGCTTTCTTAACCACCATAGCCTACCACTACCATAT
TGACAAAAACACATTTGAATACTTAATACCACCAAACAAGCCACGCATTG
GCCTATTCTATATAACACCAAAAATCCACAAACCAAAAATCCCAGGAAGA
CCAATTGTTTCCGCAGTGAACTCGGTAACAGAGAACATTTCTGAATTCCT
GACGAAATGTGTCCAACCACTAACCTTAACACTAAAATCATTTATCAAAG
ATACAAAACACTTTCTACAGAAAACTATAGACCACAATTCGAGCAACACA
ACATACCTAGTGACATTTGACATCAAATCCTTATACACAAACATACCCCA
CGAAGAAGGCATAGAAGCATGCCTACACTATATAAATAAAAACCACCTAG
ATATACCAAAATTCACCCCAAACAACAGAATTCTTCACACCCTGTTCCTT
TTTATACTcgaaaacaattattttgaatttaaagaccggaaatataaaca
aaaatttggtacTAGCATGGGAACGAGGGTTGCCCCTAGCTACGCAACCC
TGTTCCTAGGAAAAATGGAGGAGGATAAAATACTAATTGAACCATTCAAA
TCAAAAATCTCCAAATACTCAAGATTTTTGGACGATATCTTTTTACTATG
GAACAGTAGTCTAGATGAACTACTCAAGTTTGAAAAATACCTAAACAATA
TCCACCCAACAATAAAATTCACGATGGAATACTCGACCAAAGAAATCAAC
TTCTTGGACACGACCATATACATTGATGAAAAAACTAGTAAACTCAAAAG
TAAGGTATTTATCAAACCCACAGACGCAAGGTCCTTACTACATTACAC Run BLAST on NCBI protein sequence of TCONS_00041609-protein >TCONS_00041609-protein ID=TCONS_00041609-protein|Name=TCONS_00041609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MTLKKVELNLLDKGLTFVPTPKTTHIKKHIQHALRTFTNRIFTKYFFSKK
PSKPKLLYRTKQWKPPIPNNRTLKAYIRKTKFEINRFIQKNKNRSLKQNL
NPHETKTLKRLSQNKNIEIKPADKGGALVIMNKTCYKSKVFDHLNDEKSY
ELIKEEQTSDLKTNIEAFLTTIAYHYHIDKNTFEYLIPPNKPRIGLFYIT
PKIHKPKIPGRPIVSAVNSVTENISEFLTKCVQPLTLTLKSFIKDTKHFL
QKTIDHNSSNTTYLVTFDIKSLYTNIPHEEGIEACLHYINKNHLDIPKFT
PNNRILHTLFLFILENNYFEFKDRKYKQKFGTSMGTRVAPSYATLFLGKM
EEDKILIEPFKSKISKYSRFLDDIFLLWNSSLDELLKFEKYLNNIHPTIK
FTMEYSTKEINFLDTTIYIDEKTSKLKSKVFIKPTDARSLLHY Run BLAST on NCBI transcript from alignment at sc0002937:15335..20114+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041609 ID=TCONS_00041609|Name=TCONS_00041609|organism=Clytia hemisphaerica|type=transcript|length=4780bp|location=Sequence derived from alignment at sc0002937:15335..20114+ (Clytia hemisphaerica)
CAGGGtactatttgaaactatgacacaagtaccctatgtgcttcactgtg
cgaactcactgcgattgaccgaggccgctccgaagagacgcctcacctga
cggaaacttacagcttgggccgacaaaaaagttttttgggctGACAAGGA
ATTTCTTTGGCCGAAcaagaaagattttttggccgacaaagaaagatttt
ttggccgaacaaaaaaatttttttggccgttagaaaaaatttttgggccg
acaaaaaaattttttgggcctgaCAAAAGATTTGGACCAAATACCCCCGA
GACTACCACTACACACCCCACACGCCCTATATCTGCACACCGCCCCGACT
CTACTATATCTGAACACCGCATCGACTCTACTATACATCTAAGCTACATC
TCAAGTACCTTGAGTGACCCCCCGGGGAGATACCAGAAAACCGTTAAACT
AATCCCACCCTACACCACCTCCCGCAAACTACCGCCACCATACTACACGG
AAACTCAAACTTGGCACCCATCAAGACACACTACCCTACTTAAAAATATA
GAAAAACATCATCCACTACTCATCTATCTTAACTCTACCACCACCCTTAC
CACCCACGCTCGAACCACCCCCGTACACATTTATCTCACGGCAAACCACC
CCACAGCACATATTAACAAAAAATGAAACCAATCCAAACAATGGACTACG
TCATTAGCACAACAAAAGCTTTCCACCATGAGAGGGCCCAAACAAAAGGG
CTGTCTATGGCAACAACAAACGCGCTATCGAAGCGAACCAATCACAATAA
ACCTGAAACAAGAAAAACCAATCATGACCCGGAGATAAGAACAACCAATC
AGAAACAGAAAAAACCAAACACGTGACCATTGCACACAACAACTGCACAA
AAAGAAACACGCGAACCAAAAACATCCTTTTTGAAGATAAACCACACTGA
CAAGATGAGCTCACAAGATCTATTTGAATCTGGTAAGTTCCTTACATATA
TTTACTTGATTTTTCAAGCTCCAAAACCCATAGAAATACATTAAAAAATA
CCCCACACCACTCCAAACAAAATTACTTTCCGAAAGAGTGTTCTCCATGA
GGATGTTACCCACACACGAGTAACATGGCCCAACTATCATGAGAAGTTAT
CGAAATAAGGGCCGAAAACTTTGATTGAGTGATAGACTTTCGACAGAAGA
CCTCCGTAAACACTCTCGGAAAAATGAAACGCCACCATACGTTTTCATGC
ACAATGAACGTTCAAAAGTGATAAACCCTCGAAGAAAATCGAAAATTTCA
AACCCAACCTACTAATCTATGGCAAATGCTATAACCCTCAGCCCATAGAA
AAATATTAGGTAGTACTCTTATTCCCTCGACCATGAGGAAATTTGACGAA
AGTCTTGAAAAGAATTTCGAAAAATGTTAAAAAATTGTCTTCAATTATGG
GCAACTGCACATAATTAACTTATAGAGGAAACCTACACAAAAATAATGGG
ATGTAAATGACAAGGTCTTTACTACCCATGAAACACAATTTTTCCAAAAA
ACACTATCCAAAACCCCTTCAAAAAATTACACCAGATTATTTAAATTTAA
AAAACTATAACCGAAAAATCAATTTACTATATGATAACTAATCAATCAGT
TGAATAACTTACCAACCCAACAAAAATCTTGGACAACCAAAATCTACACA
AACCAAAATATCCTTGCTCGACAAAAAATCGAGAAAACCTAATCATTCTT
CAAAATAACGAAACCACCTTATCACCTCTATGAAAACTATGTCTCAACAA
AAAAATTTTTCCTAAAAAACTTCAAAAAATTTTCTAAAAAAACAACAACA
AAAAAAGTACGCAAAAAAACTTCAACTTCAAAAAAACTCACACATAACAA
ACATATCAAAAAAATTTTCAACAAATTTCGCAAAAAACTGAACACGAACG
CTGAAAAAATATTCAACAATAGAAATAATATGGTCCAACCATTATATTCT
ATTATCCCCCATTATTTAAAACAGTTTACATTCTTTCGACTACGAACTCA
CCATTATACATAAAAAATGAGAAATTATACAAAGAAAAAGCCCCACTCGT
ATTTTAAAGTTTATTTCTTTCATAAGAACACATACCAATTAACATCATAC
CACTACACTAAATTGACTTAAGAACTAATTACAAATTCTTATAAATACAA
AGAAAAAAGAAAAACCCCACTCTTATTTTTACAGCTCACCACTTTTATAA
GAACACAAATTAACATTGCACAATTACACTAATTCAACTAAAGAACTGAA
TATAAATTCTTATAAAATACGAATGTGCACAAAACTCAAAATAGACCCCA
CCCCAAATCTTTATATACAAAAAAATACACATAAACTCTTATAAACAAAA
TATTACAACCACAATAAACTTCATAGATTACATATATAAAAAAACCGTAG
AAGCTCTTAGAAAAAGAAGGCATTGCATATATAGACAAACTACACCTAAA
ACGTAAGACACCACGACAAATACCAATTGTAATATTGAATACTAAAAACA
AACCTAATAAACTGTGATCCCTAGATTAGAATCATTTAACTTCTTCACTA
TATTACCTCTACAGGAAATGAGGAAAACATCTCACCACCAATGACCACAG
CCAAGACCACCAAACCAACCAAGGAAAACCTCTCACCACCAATGACCACA
ACCAAGACCACAACCAACGCCGCAAAACGAACCGCGAGAACACTGGAATA
CAAAGATCCCCCAGAACAAAACATAGACCCGTTCCTCGAGGAAATCGACA
GAACAATCACACTAACACAACGTGCAAACACAGAGAGACAACAACAGAAG
GTATCACACCAAGCCGTACAGGAATATAAATGGCATACACTACAAGCAAT
AAGCACCAACAATCAAATTATGCAACTAACCAGACACAGGAACAAAGAAA
CCGTACCGATAGGCTTAATACCAACTGTGACATCAAAGGTCACGAACCAA
CTCAACACTGACCACCGAAAACAATGGGACAAAATACTGACAAAAGCAGC
ACATGAACTAAGAGACGTCCTAATCGAACACCACACCTCAAAGAAGGAAT
ACCACAAGGGACTTAGAGAACTGGCAAGAGAGAAACTTTCTGACGAGAAC
TTAAAAACGGTAAATGAGGAGATCCAAAAACAAAGACGGACACCACCGCC
CACCGAAAATAAACGCCCCAACAATAAGAGAAGACACAGCCACCACGACG
ACCAACAACAAGAGTCAAAAAAGTGATTTATAATGTATATAATGTAAATA
GTAAAACTCATAAACAAGAAAAAGATATACCTGCAAACAAAAAAACCAAA
ACGGATACCTTCCAAAAATACCCACAACTAGACATAAACCACTACCACAA
GAAAACAACACAAAAAACAAAAAATACTACTGTCAAAAACTTTTCGAACA
TGACGCTAAAAAAAGTAGAATTGAACCTGTTAGATAAAGGACTAACTTTT
GTACCAACACCAAAAACAACACACATAAAAAAACATATACAACACGCCCT
AAGAACCTTTACAAATAGAATATTCACTAAATATTTTTTCTCGAAAAAGC
CTTCAAAACCAAAACTTTTATATAGAACTAAACAATGGAAACCACCAATC
CCCAACAATAGAACATTAAAAGCATACATTAGAAAAACTAAATTTGAAAT
CAACAGATTTATACAAAAAAACAAAAACAGAAGCCTAAAACAAAACTTGA
ACCCGCACGAGACTAAAACATTAAAAAGATTATCCCAAAACAAAAACATC
GAAATAAAACCAGCTGATAAGGGTGGAGCCCTGGTCATCATGAACAAGAC
CTGCTATAAATCCAAAGTTTTCGACCATCTTAACGATGAAAAATCATATG
AGCTAATAAAGGAAGAACAAACCTCAGACCTAAAAACCAACATTGAAGCT
TTCTTAACCACCATAGCCTACCACTACCATATTGACAAAAACACATTTGA
ATACTTAATACCACCAAACAAGCCACGCATTGGCCTATTCTATATAACAC
CAAAAATCCACAAACCAAAAATCCCAGGAAGACCAATTGTTTCCGCAGTG
AACTCGGTAACAGAGAACATTTCTGAATTCCTGACGAAATGTGTCCAACC
ACTAACCTTAACACTAAAATCATTTATCAAAGATACAAAACACTTTCTAC
AGAAAACTATAGACCACAATTCGAGCAACACAACATACCTAGTGACATTT
GACATCAAATCCTTATACACAAACATACCCCACGAAGAAGGCATAGAAGC
ATGCCTACACTATATAAATAAAAACCACCTAGATATACCAAAATTCACCC
CAAACAACAGAATTCTTCACACCCTGTTCCTTTTTATACTcgaaaacaat
tattttgaatttaaagaccggaaatataaacaaaaatttggtacTAGCAT
GGGAACGAGGGTTGCCCCTAGCTACGCAACCCTGTTCCTAGGAAAAATGG
AGGAGGATAAAATACTAATTGAACCATTCAAATCAAAAATCTCCAAATAC
TCAAGATTTTTGGACGATATCTTTTTACTATGGAACAGTAGTCTAGATGA
ACTACTCAAGTTTGAAAAATACCTAAACAATATCCACCCAACAATAAAAT
TCACGATGGAATACTCGACCAAAGAAATCAACTTCTTGGACACGACCATA
TACATTGATGAAAAAACTAGTAAACTCAAAAGTAAGGTATTTATCAAACC
CACAGACGCAAGGTCCTTACTACATTACAC Coding sequence (CDS) from alignment at sc0002937:15335..20114+ >TCONS_00041609 ID=TCONS_00041609|Name=TCONS_00041609|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at sc0002937:15335..20114+ (Clytia hemisphaerica)
ATGACGCTAAAAAAAGTAGAATTGAACCTGTTAGATAAAGGACTAACTTT
TGTACCAACACCAAAAACAACACACATAAAAAAACATATACAACACGCCC
TAAGAACCTTTACAAATAGAATATTCACTAAATATTTTTTCTCGAAAAAG
CCTTCAAAACCAAAACTTTTATATAGAACTAAACAATGGAAACCACCAAT
CCCCAACAATAGAACATTAAAAGCATACATTAGAAAAACTAAATTTGAAA
TCAACAGATTTATACAAAAAAACAAAAACAGAAGCCTAAAACAAAACTTG
AACCCGCACGAGACTAAAACATTAAAAAGATTATCCCAAAACAAAAACAT
CGAAATAAAACCAGCTGATAAGGGTGGAGCCCTGGTCATCATGAACAAGA
CCTGCTATAAATCCAAAGTTTTCGACCATCTTAACGATGAAAAATCATAT
GAGCTAATAAAGGAAGAACAAACCTCAGACCTAAAAACCAACATTGAAGC
TTTCTTAACCACCATAGCCTACCACTACCATATTGACAAAAACACATTTG
AATACTTAATACCACCAAACAAGCCACGCATTGGCCTATTCTATATAACA
CCAAAAATCCACAAACCAAAAATCCCAGGAAGACCAATTGTTTCCGCAGT
GAACTCGGTAACAGAGAACATTTCTGAATTCCTGACGAAATGTGTCCAAC
CACTAACCTTAACACTAAAATCATTTATCAAAGATACAAAACACTTTCTA
CAGAAAACTATAGACCACAATTCGAGCAACACAACATACCTAGTGACATT
TGACATCAAATCCTTATACACAAACATACCCCACGAAGAAGGCATAGAAG
CATGCCTACACTATATAAATAAAAACCACCTAGATATACCAAAATTCACC
CCAAACAACAGAATTCTTCACACCCTGTTCCTTTTTATACTcgaaaacaa
ttattttgaatttaaagaccggaaatataaacaaaaatttggtacTAGCA
TGGGAACGAGGGTTGCCCCTAGCTACGCAACCCTGTTCCTAGGAAAAATG
GAGGAGGATAAAATACTAATTGAACCATTCAAATCAAAAATCTCCAAATA
CTCAAGATTTTTGGACGATATCTTTTTACTATGGAACAGTAGTCTAGATG
AACTACTCAAGTTTGAAAAATACCTAAACAATATCCACCCAACAATAAAA
TTCACGATGGAATACTCGACCAAAGAAATCAACTTCTTGGACACGACCAT
ATACATTGATGAAAAAACTAGTAAACTCAAAAGTAAGGTATTTATCAAAC
CCACAGACGCAAGGTCCTTACTACATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041609-exon-sc0002937-1491911889:15335..16316 | TCONS_00041609-exon-sc0002937-1491911889:15335..16316 | Clytia hemisphaerica | exon |
| TCONS_00041609-exon-sc0002937-1510915933:15335..16316 | TCONS_00041609-exon-sc0002937-1510915933:15335..16316 | Clytia hemisphaerica | exon |
| TCONS_00041609-exon-sc0002937-1575043694:15335..16316 | TCONS_00041609-exon-sc0002937-1575043694:15335..16316 | Clytia hemisphaerica | exon |
| TCONS_00041609-exon-sc0002937-1491911889:17949..20114 | TCONS_00041609-exon-sc0002937-1491911889:17949..20114 | Clytia hemisphaerica | exon |
| TCONS_00041609-exon-sc0002937-1510915933:17949..20114 | TCONS_00041609-exon-sc0002937-1510915933:17949..20114 | Clytia hemisphaerica | exon |
| TCONS_00041609-exon-sc0002937-1575043694:17949..20114 | TCONS_00041609-exon-sc0002937-1575043694:17949..20114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002937 | supercontig | sc0002937:15335..20114 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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