TCONS_00041602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041602
Unique NameTCONS_00041602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length855

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041602 ID=TCONS_00041602|Name=TCONS_00041602|organism=Clytia hemisphaerica|type=transcript|length=855bp
ttctaaaacaatggaaagacaatagttcgctctccaccgttttatttgat
gtttatccagagttctatgataaatccatgctTATAGGGGAATGTCAAGG
AACTGCGACAGTGACCCGACGACCAGAAAACAGCCATGTGTTTCCATACA
TTATGTCCTTAGAAAATATtccttttgtttgtttttttggaactCGTAGa
tcataaataaattttgtcttCTTTTCCCTTTGCAGACGTCACCGTCCTTT
GATCTGTCAATTGTACCGTTTGAACACTGATACAGATGTTGAAAGCTCAT
CGGAAGTCGAAGGACAAACAACATACAATCCTTCGTTTGAGGGCAAGCAG
TCAAGCTCCGCCCAGTCCAGTCAAGCTACCAATATTCAAGTGTCCTCTCC
TCTACATCAGATCCACCCTCGCCGCCCACTGGGTAACCTCCGGAACATAC
CATCTTGGAATCGAATCGGATCCAGCTTTCTATCAAATCCCCCAAACAAC
AACAGCTGACTTCCTTCTTCTCACTTGGCATTATGTTTTGGTCAAGGGGA
CGCAAAGAAGAACCAGTCCGAAATATTccgaagaagagtttggtagATTG
ACCAAGAGATTCTAATGTCAGACGAAATGAACTAAAAGCGTCGCAGCGCC
CTTTGCCATATGTTGCATATTTTGAGTAAATGAATATCTATGCTCATAGC
ATCAAGCATGAAGTTTAGAGCTCAATGGTTACTTGACTGACGGTATTTAT
CAGggtgattaaaaatcaataaagggTATACAATCCAAAGCAATCGTCAA
GCTGTCATGCGGGCGGGAATGCTCTTCGTCGATCTTGGAATGATCTCTAG
CAGGT
Run BLAST on NCBI

transcript from alignment at sc0002931:288..5648-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041602 ID=TCONS_00041602|Name=TCONS_00041602|organism=Clytia hemisphaerica|type=transcript|length=5361bp|location=Sequence derived from alignment at sc0002931:288..5648- (Clytia hemisphaerica)
TTCTAAAACAATGGAAAGACAATAGTTCGCTCTCCACCGTTTTATTTGAT
GTTTATCCAGAGTTCTATGATAAATCCATGCTTATAGGGGAATGTCAAGG
AACTGCGACAGTGACCCGACGACCAGAAAACAGCCATGTGTTTCCATACA
TTATGTCCTTAGAAAATATTCCTTTTGTTTGTTTTTTTGGAACTCGTAGA
TCATAAATAAATTTTGTCTTCTTTTCCCTTTGCAGACGTCACCGTCCTTT
GATCTGTCAATTGTACCGTTTGAACACTGATACAGATGTTGAAAGCTCAT
CGGAAGTCGAAGGACAAACAACATACAATCCTTCGTTTGAGGGCAAGCAG
TCAAGCTCCGCCCAGTCCAGTCAAGCTACCAATATTCAAGTGTCCTCTCC
TCTACATCAGATCCACCCTCGCCGCCCACTGGGTAACCTCCGGAACATAC
CATCTTGGAATCGAATCGGATCCAGCTTTCTATCAAATCCCCCAAACAAC
AACAGCTGACTTCCTTCTTCTCACTTGGCATTATGTTTTGGTAAGTATTT
GATATCAACTTTATCCTGATTAGATAAGTCGAGAAATCATTCTCTTGACA
TTAGCTCGTCCAACCATCTTTCTCTCTGTGTGACCCGGTAATTATTCCCG
TCCCGTGTGTACCTCATCATAACATTTGAAAATTTGTTCTTTTGATAAAA
ATGTATATTATTTGGTCCTAAATTGCATTCCTAATGAATGTACCCGACAA
GCTAATTATAGAGGGCGCTGAGAAAACTGACTTGAAACGCAACCGTTCCT
CCATTACATATCTCCTACATAGGATTTGAAGCTGCTAAATCCTACCTAAG
CTGCCCGACCCGGCTCGTCGTCAAAGCTAGTGATGTATATCCTAAGGCTT
CACTTTTTCTTGCCTAGGAAAGGTTCCCTTCTACAATTAGTGCCATAACA
TATTGGCACTTTTGGCTAATTTACCATTCGAAAATTGAAGTTCGAGCAAG
AATGTCAATTTCGGGCCTTCAACTTGATTTCAACGATTATTTCGATCTGG
GAGAGATTTATTGTTTTTTAGGCTATATTTCAAGCCCTACTGGACCATTT
TTGAACTTTTGGATCTTGGAGTCTTAAGTCCAGCGTTAAAACTCAGAGTT
AAAACTCTACCCTTCGAACCTACTTTAGAGCACTTGCAAATCGATTGTGG
TTTCAAAACACCCCGGTGGATTTCCTTTTTGTGCCAAGTATTTCGTCACC
GATTGTAGTGCTTGGGGCTTTTACTTCATTGGGTGTGACATTTTGCTCGA
TATTCCTTGCAATAAAGTTCCGAAATTCATATTTTTCTAGGTCAAGGGGA
CGCAAAGAAGAACCAGTCCGAAATATTCCGAAGAAGAGTTTGGTAGATTG
ACCAAGAGATTCTAATGGTGAGCTTCATGTGTTGCTTTAGAAGATTTGTT
TTTTGTGATGAGGTATTATTACTTGTGCATCCAGAGAAATTGGGTGGGTT
TACATCTAGGAGAGAATCGATTAAGAAATACAATAGAAATACCACGATTT
CTTTTGATTCCATCACGATTCCTTTGTAAATCATAATTGATTTTCCCCAA
GCTTTCTGATTGGTTCAAATTTTATTACAGAACAGGTTTTTCTATATTCA
ACCGTCTATACGTTTCAACTTTACCATACAAGTTCATGATGCGTAGTAAA
GCTTGATCAAAAAAATCATTTGCGTAGTTGTCATCATCGGCTGCGTTTAG
ACCTTTTATAAAATATCACATCATCCAGTATCCAACCAGGATTACTCCCG
GTAGGATAAAGTTGGTAGGCATTTGTAATTTGGCATTTGCTCACGAGGGA
TTCGATTTTAATAGCTTTTCCATTGTATTTTCTGTCATTGCATTTAAGGA
ATCGTCTTTTTNAGAGGCTGCGTTTAGACCAACTGGCATTTGTAATTTGG
CATTTGCTCATGAGGGATTCGATTTTAATAGCTTTTCCATTGTATTTTCT
GTCATGGCAATTAAGGAATCGTCTTTTTAGAGTCATTACTGAAAAGGTAA
TTCCCTCAACTTTGACAGATCAAACAATGAAAAGCATGGAATTTCTCAAA
AACTGCAGTCATTAAGACTGAAACTTTTTGCCGTAGGTCTAGGCTATGGC
AAATTTTGCAAATTTTACAATCTATAGAAAGAACTGAATAAAAACGTGCA
AATACTTTAAAAAATCAAAAATGTCATTTTTTCTCTTTGTTTTGGTTCCT
TTGTTTTATTTGAAATGCCAGAAAAGGGAATTCCTTTGCTCAAAATTGCA
TTTCAAATGCCAACGAAATGCCAACACGCTGGCATCATTAGGCATTTGAC
AAACCGAACAATTGCGCGGAACAATAGAATTCAAAAGAATACTGCAAGCA
ATTACAAATGCCAGGCTGGTCTAAACGCAGCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGAAAAATGTGTACAAATCTGTACTAGCTTTAAGCTAATAGAGT
TCGACTGCCTATTTTACAAAATGAATCATTCATCATCATCTGTTAATGCC
CAATCGCTGACAATTTCTTCTGTAGAGCATTTTGGTTTACAATTTGAAGA
TATTTTTGTTCGGTTTTGTAATTTTTTAACGAAGCGTAGTTTTGTTCTTG
GGCTTCCTCTTACGCACCAGTTGAATCCTTTATTGTTATTGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAGGCGCTTAATAAT
CATCACGGTTCCTTAAATCTCATTAGATGTATGCACCTTACCCAATTTCT
ATGATGTCATTCTTTCTTTTCCAGTCAGACGAAATGAACTAAAAGCGTCG
CAGCGCCCTTTGCCATATGTTGCATATTTTGAGTAAATGAATATCTATGC
TCATAGCATCAAGCATGAAGTTTAGAGCTCAATGGTTACTTGACTGACGG
TATTTATCAGGTAAATAACTTTGTGATCATATTAGATTTCAACAATAACC
TACTAACGCGTGGTTACTGGAGAGTGATCGAGTTGATACCCCGACGTTGT
CCCCACGAACCAGTGTAGACTTCATAGCCCAGTCGGTAGCGCAGTTTAAC
TAGTAATACGAAAGTCGCGAAATTCCACCCTTTTGGTCTTTAAACATTTA
AATACAAGATTAAATTTCAAGGCAAATTCATTTCACTTCTTTAAAAGGAT
TTTAAATTTGAGGTACCTTACATAGGCTGTGTTTTTGTATAATAGACCTA
ATTAGAAAATGGCAAACAAATATTGAAGAAGAAGATGAAGACTTTCTTAA
CATAACTGAAAACTCAAAATTTTTCGTTTTAAATCACCAAAATCTTTCTT
TTGATACAGGGTGATTAAAAATCAATAAAGGGTATACAATCCAAAGCAAT
CGTCAAGCTGTCATGCGGGCGGGAATGCTCTTCGTCGATCTTGGAATGAT
CTCTAGCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025537XLOC_025537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041602-exon-sc0002931-1575043694:5109..5648TCONS_00041602-exon-sc0002931-1575043694:5109..5648Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1575043694:4232..4308TCONS_00041602-exon-sc0002931-1575043694:4232..4308Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1575043694:789..924TCONS_00041602-exon-sc0002931-1575043694:789..924Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1575043694:288..389TCONS_00041602-exon-sc0002931-1575043694:288..389Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1510915933:5109..5648TCONS_00041602-exon-sc0002931-1510915933:5109..5648Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1510915933:4232..4308TCONS_00041602-exon-sc0002931-1510915933:4232..4308Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1510915933:789..924TCONS_00041602-exon-sc0002931-1510915933:789..924Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1510915933:288..389TCONS_00041602-exon-sc0002931-1510915933:288..389Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1491911889:5109..5648TCONS_00041602-exon-sc0002931-1491911889:5109..5648Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1491911889:4232..4308TCONS_00041602-exon-sc0002931-1491911889:4232..4308Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1491911889:789..924TCONS_00041602-exon-sc0002931-1491911889:789..924Clytia hemisphaericaexon
TCONS_00041602-exon-sc0002931-1491911889:288..389TCONS_00041602-exon-sc0002931-1491911889:288..389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002931supercontigsc0002931:288..5648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02471	0.65155	0.578989	0	1.24264	1.40199	1.78031	2.23113	0.704253	1.42865	0.768584	0.863437	0.508654	2.03823	0.866602	0.678921	0.75104	1.28099	0.816942	0.51017	0.688105	1.59459	2.11035	2.26183	2.87148	1.66618	0.212785	0.319361	1.75919	2.10673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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