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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041596 ID=TCONS_00041596|Name=TCONS_00041596|organism=Clytia hemisphaerica|type=transcript|length=2050bp
TACTTCAGCCCTTGGCATGGGTGTCAATATCAGAAATGTAAGACATGTCA
TCCATGTTGGATTACCTAGCGATGTGGAAGCTTATATCCAAGAGCTTGGA
AGAGCCGGTAGAGATGGTGATCAAAGTAGTGCTTTTTTGTTTTATCGCCC
TTGTGATATCGCTCACAATGCGGATGAAGAATTGGTAAGGATCATTAAGA
ACAAAGAGGAAAAATGTCGTCGAGTTGCCTTGCTTAAGTGTTTCAATGAA
GTACCAGATAATGATTTTGATAATGAAAAGCATAAGTGTTGTGATGAATG
TGAAAAGATGTGCAAGTGTGATGAATGTGCTGTACCTAAAGAAGAAATTA
CTCCCCCAAAATTGAAAAGTGTTAGATCAGCAGATGACGAAGAGAAAGAA
ACGATTTTGGCTTGTCTTGTTTCTCTTACTTTAAGTAATGANAATGTGAA
ATTGGTCATGGAGAATATCAACTGTATTCAAACCGAAACTGATCTTTTGA
CCTTAGGCCTTGATGAATCTGTCAGCATGTTTGTGAGCCTGATATTTAAA
GAAGTGTTCTACATAGACAATTTGAAAGTACCGCCAATTGATGACACAAA
GAAAGATGATATTGACATACTATCAATGAAACAGCCGTACAAGGAAAAAT
CAAATGATGAAATTGATTTCGACTCTGACAATGAAATCTTTTGGCAGGAC
TTTTTTTGATGTCTAAACTGCAACatgttttataaaaactagtacCTACA
TTAGAATCAAAACAGTTTTCATGCAAAAACCAAGGACTTTTTACCAGATG
TCTGACCAAATCAAAGTTTGTATCATTCTCCAGGGCCAATTAAATTAACA
CTAGTTGTCAGACTAATGAGTTATCAATAATCTGTTTCTGGGTCATAGGA
AAAGTCATGGTTGTGCCACTTGTTTGTAAGGCGTTTCATCCATTTCACCA
GTGAAACTTTGttcattttgttgaaaatgtcattgttaaattttttgaaa
gtctcaAGTTTTCTGCCTGgtgttttgtgaaaatttttgctGTTGTGGTG
AATCTCTTTGAAAAGAGTGCTGAACATTTCATGTGCGTATTTATTTGAGT
GGTGATTTGACTTATTATTGGTTCCAGCCTCATGGAGGGTCGACTCAACC
AATTCCTCCATCCCTCCAATTGCCTTTGNCGCATATTTATTTGAGTGGTG
ATTTGACTTGTTATTGGTTCCAGCCTCGTGGAGTGTCGACTCAACCAATT
CCTCCATTCCTCCAATTGCCTTTGAAATGTCTTCAACACTTTTGTCAGTG
AGGTTTTGCATACCTTGTGATTTGATCAACGCTTTTGTCACTTTGTTGAT
ATGTTCCAACCGCAAATCAAGACTTATATTTTTGCCTTTTCCACCTTTGC
TATTCACAAAACGATTCCATTTCAGCCTATGAAAAACTCTTGGAGACAAC
AGGGCAAGTTCTCTTGCCTTTAGGCGCAGACATACATAGGCATACTTGTG
ATTTCCATTCAACCGGAAAATGAATGTAAATACGTTGTAGAATCTAAACA
AACGATCTCCATCACCTTCTTTGACAGCATCGTTGGCATCAAGTAGTAGC
AATCCAACGCAAAGCCTTGAGCAGCTATATTTGAATAAATCGTCATCTAC
TAATTCTTTCTCTAAGGATGGTAATGAAGTCAAAGGTTCAAGCCCATGCT
CTCGTTGCTCGTGCATGTTCTTAGCAGGTAGGAAGAAGAATCTCTGTTGT
CAAGAAATAAGAAATAATTTAAaatggaaaaaggaaaaatacagGTCTGA
TTTTTTGAATGGGCTTTACATCTGATTTTTCTTATAGTAAATTTAAGGGA
CAGTTGAAGACTTTTTAAAAGCATAATATATGTAATCAAGCAATAGGATG
atgaaagtaataaaaaatgggTTGTATTTACTTTGTTACAGGTAGCATCA
CGGCATTTGTGAGTTCTTTGTTCTGGGAGCATTTTGGTTAAAGATTGCAA
TGATCCCATTATGttatctttcaaaaataaacgaATTCTTCCATGAAGCC Run BLAST on NCBI transcript from alignment at sc0002927:2307..4416+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041596 ID=TCONS_00041596|Name=TCONS_00041596|organism=Clytia hemisphaerica|type=transcript|length=2110bp|location=Sequence derived from alignment at sc0002927:2307..4416+ (Clytia hemisphaerica)
TACTTCAGCCCTTGGCATGGGTGTCAATATCAGAAATGTAAGACATGTCA
TCCATGTTGGATTACCTAGCGATGTGGAAGCTTATATCCAAGAGCTTGGA
AGAGCCGGTAGAGATGGTGATCAAAGTAGTGCTTTTTTGTTTTATCGCCC
TTGTGATATCGCTCACAATGCGGATGAAGAATTGGTAAGGATCATTAAGA
ACAAAGAGGAAAAATGTCGTCGAGTTGCCTTGCTTAAGTGTTTCAATGAA
GTACCAGATAATGATTTTGATAATGAAAAGCATAAGTGTTGTGATGAATG
TGAAAAGATGTGCAAGTGTGATGAATGTGCTGTACCTAAAGAAGAAATTA
CTCCCCCAAAATTGAAAAGTGTTAGATCAGCAGATGACGAAGAGAAAGAA
ACGATTTTGGCTTGTCTTGTTTCTCTTACTTTAAGTAATGAATATGTGGA
ATTGGTCATGGAGAATGTCAACTGTATTCAAACCGAAACTGATCTTTTGA
CNAATGTGAAATTGGTCATGGAGAATATCAACTGTATTCAAACCGAAACT
GATCTTTTGACCTTAGGCCTTGATGAATCTGTCAGCATGTTTGTGAGCCT
GATATTTAAAGAAGTGTTCTACATAGACAATTTGAAAGTACCGCCAATTG
ATGACACAAAGAAAGATGATATTGACATACTATCAATGAAACAGCCGTAC
AAGGAAAAATCAAATGATGAAATTGATTTCGACTCTGACAATGAAATCTT
TTGGCAGGACTTTTTTTGATGTCTAAACTGCAACatgttttataaaaact
agtacCTACATTAGAATCAAAACAGTTTTCATGCAAAAACCAAGGACTTT
TTACCAGATGTCTGACCAAATCAAAGTTTGTATCATTCTCCAGGGCCAAT
TAAATTAACACTAGTTGTCAGACTAATGAGTTATCAATAATCTGTTTCTG
GGTCATAGGAAAAGTCATGGTTGTGCCACTTGTTTGTAAGGCGTTTCATC
CATTTCACCAGTGAAACTTTGttcattttgttgaaaatgtcattgttaaa
ttttttgaaagtctcaAGTTTTCTGCCTGgtgttttgtgaaaatttttgc
tGTTGTGGTGAATCTCTTTGAAAAGAGTGCTGAACATTTCATGTGCGTAT
TTATTTGAGTGGTGATTTGACTTATTATTGGTTCCAGCCTCATGGAGGGT
CGACTCAACCAATTCCTCCATCCCTCCAATTGCCTTTGNCGCATATTTAT
TTGAGTGGTGATTTGACTTGTTATTGGTTCCAGCCTCGTGGAGTGTCGAC
TCAACCAATTCCTCCATTCCTCCAATTGCCTTTGAAATGTCTTCAACACT
TTTGTCAGTGAGGTTTTGCATACCTTGTGATTTGATCAACGCTTTTGTCA
CTTTGTTGATATGTTCCAACCGCAAATCAAGACTTATATTTTTGCCTTTT
CCACCTTTGCTATTCACAAAACGATTCCATTTCAGCCTATGAAAAACTCT
TGGAGACAACAGGGCAAGTTCTCTTGCCTTTAGGCGCAGACATACATAGG
CATACTTGTGATTTCCATTCAACCGGAAAATGAATGTAAATACGTTGTAG
AATCTAAACAAACGATCTCCATCACCTTCTTTGACAGCATCGTTGGCATC
AAGTAGTAGCAATCCAACGCAAAGCCTTGAGCAGCTATATTTGAATAAAT
CGTCATCTACTAATTCTTTCTCTAAGGATGGTAATGAAGTCAAAGGTTCA
AGCCCATGCTCTCGTTGCTCGTGCATGTTCTTAGCAGGTAGGAAGAAGAA
TCTCTGTTGTCAAGAAATAAGAAATAATTTAAaatggaaaaaggaaaaat
acagGTCTGATTTTTTGAATGGGCTTTACATCTGATTTTTCTTATAGTAA
ATTTAAGGGACAGTTGAAGACTTTTTAAAAGCATAATATATGTAATCAAG
CAATAGGATGatgaaagtaataaaaaatgggTTGTATTTACTTTGTTACA
GGTAGCATCACGGCATTTGTGAGTTCTTTGTTCTGGGAGCATTTTGGTTA
AAGATTGCAATGATCCCATTATGttatctttcaaaaataaacgaATTCTT
CCATGAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041596-exon-sc0002927-1491911889:2307..2747 | TCONS_00041596-exon-sc0002927-1491911889:2307..2747 | Clytia hemisphaerica | exon |
| TCONS_00041596-exon-sc0002927-1510915933:2307..2747 | TCONS_00041596-exon-sc0002927-1510915933:2307..2747 | Clytia hemisphaerica | exon |
| TCONS_00041596-exon-sc0002927-1575043694:2307..2747 | TCONS_00041596-exon-sc0002927-1575043694:2307..2747 | Clytia hemisphaerica | exon |
| TCONS_00041596-exon-sc0002927-1491911889:2808..4416 | TCONS_00041596-exon-sc0002927-1491911889:2808..4416 | Clytia hemisphaerica | exon |
| TCONS_00041596-exon-sc0002927-1510915933:2808..4416 | TCONS_00041596-exon-sc0002927-1510915933:2808..4416 | Clytia hemisphaerica | exon |
| TCONS_00041596-exon-sc0002927-1575043694:2808..4416 | TCONS_00041596-exon-sc0002927-1575043694:2808..4416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002927 | supercontig | sc0002927:2307..4416 + |
Blast
The following BLAST results are available for this feature:
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