TCONS_00041587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041587
Unique NameTCONS_00041587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041587 ID=TCONS_00041587|Name=TCONS_00041587|organism=Clytia hemisphaerica|type=transcript|length=1783bp
aaaataagtcccgcaaaaattaaattatttcgcgaaaaaattgtctcgca
aaaataagtcccgcgaaaatttatcccctTAAGGTCGCATATTTTCCTAT
GAAACCTCACCACAGCAAATTTGCTGCCATTGCACCTGCATATAATCCAA
GATGGCgagataaaaatcaaaaaggtaTATTAAAACAATATAGTAAGACT
AGTAACTAGACTAATAACTGATCAATAGGGGTGGTAGTTTTCTACCACTT
TAAAGGGTGGgctaaaaaatcaaattagatCGGACAGAGATCAATAATTT
TCAACACAGAAAATCTTAGTCCCGGAGGGGGGGGgctttctaaagaaaaa
atctgAACAAGGGGGATTGGAAattctcctggaaaagggaggGACTGATA
TATATATTCTCAACAAGTGGTATTATTGACCAGACATTTTCAATCtcgaa
agattttttctaatttctagGGGATTGAAGATTTGTTGATTGTGGTCACA
TTTTGAGGTCCAAGTACAGAAAGCTTAGAGATATTTACTTTGCCTATTCA
CCCATATCACCGTTATCATTACAAACCATTCAAAGATATGTTTTTTTCGA
ATTGAGGAGAAATCTTATACGAGCAAGCCAAATGTTCGATACAAAAAAAG
TAGGCtccaagaaaaaagtttttcaggcACACCTTTTACAATTTATTACA
ATGATGAAAACTTGAGTAAAGTTGGTATCTCAAAACTGTACTTTGAAAAT
AACAGCTGGTAATAAATTAATNAGTTGGTATCTCAAAACTGTACTTTGAA
AATAACAGCTGGTAATAAATTAATTAGTAGTAGCTAACTTCAATTAGAAG
TAAAATATTTCCAGAAATCAATGGTTTTATGGCAAATATGGAACGAGTCA
TAATTAAATATACAAAAAGGAAATGTGATTCTAAGGTCATCAATCCAcct
tattcttttctttaatgagttgtgtttttttattcagTGACCAAAgtata
aacaaaaacatcaaaatggcTCCTCAATTACGTAATCTTCTTCAACGAAA
AGTTACTTCGACTATTGGAATTGGTATTGGTTTAGGATTAGCTTCTGCAT
TTACCTGGAAATTCGCTCACGCAGATCCCAAGAGAGCAAAATACGAAGCA
TTCTATAAAAACTATGATGCAGAGGCTGAAGCCAAAGCCCTTGAAGCAAG
ACTAGCTGCAGCTGGAAAATAGATATTTTGGAAGTGACCaacaatgtttt
tttaattttattgatGAATATTGTGTAATTGAATTGTTTATAAAAAAGTT
CTTACATCAGATTTTTTTGATTCCGTCAATTTATTCTCCTTTAACCCATA
GAGAAAACAGTTTGAAAATCCATGCTAGTGCTGATTAAGTTAGGATTTAC
AATTCCTCAGCTTTCTGAAACATATTCTGACTATGACTGTTCCAATGCCC
CAAgaattgatttttgatgacttgGATAACTTAAGTTTTTCTTTGCACAG
TATACCTTAAGTGTATTGATTTTGGCATGTCCTTAATTTGGcggtattta
atttggcggatttcggaatttgtaaaatttggcgaatggggaaatttata
ataaaaaattacttagttttttaataaaattttaggtttttacctaaaat
gatgattttatatagaatttttatctttaaaagattttgttaaatttggt
gAGTGTTTTTGGCAGAGGgtcaatttaaaaaatgttggcgggtatttgaa
tttaattccagccaaaattaattcaaaaagtac
Run BLAST on NCBI

transcript from alignment at sc0002923:6433..8215-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041587 ID=TCONS_00041587|Name=TCONS_00041587|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at sc0002923:6433..8215- (Clytia hemisphaerica)
AAAATAAGTCCCGCAAAAATTAAATTATTTCGCGAAAAAATTGTCTCGCA
AAAATAAGTCCCGCGAAAATTTATCCCCTTAAGGTCGCATATTTTCCTAT
GAAACCTCACCACAGCAAATTTGCTGCCATTGCACCTGCATATAATCCAA
GATGGCGAGATAAAAATCAAAAAGGTATATTAAAACAATATAGTAAGACT
AGTAACTAGACTAATAACTGATCAATAGGGGTGGTAGTTTTCTACCACTT
TAAAGGGTGGGCTAAAAAATCAAATTAGATCGGACAGAGATCAATAATTT
TCAACACAGAAAATCTTAGTCCCGGAGGGGGGGGGCTTTCTAAAGAAAAA
ATCTGAACAAGGGGGATTGGAAATTCTCCTGGAAAAGGGAGGGACTGATA
TATATATTCTCAACAAGTGGTATTATTGACCAGACATTTTCAATCTCGAA
AGATTTTTTCTAATTTCTAGGGGATTGAAGATTTGTTGATTGTGGTCACA
TTTTGAGGTCCAAGTACAGAAAGCTTAGAGATATTTACTTTGCCTATTCA
CCCATATCACCGTTATCATTACAAACCATTCAAAGATATGTTTTTTTCGA
ATTGAGGAGAAATCTTATACGAGCAAGCCAAATGTTCGATACAAAAAAAG
TAGGCTCCAAGAAAAAAGTTTTTCAGGCACACCTTTTACAATTTATTACA
ATGATGAAAACTTGAGTAAAGTTGGTATCTCAAAACTGTACTTTGAAAAT
AACAGCTGGTAATAAATTAATNAGTTGGTATCTCAAAACTGTACTTTGAA
AATAACAGCTGGTAATAAATTAATTAGTAGTAGCTAACTTCAATTAGAAG
TAAAATATTTCCAGAAATCAATGGTTTTATGGCAAATATGGAACGAGTCA
TAATTAAATATACAAAAAGGAAATGTGATTCTAAGGTCATCAATCCACCT
TATTCTTTTCTTTAATGAGTTGTGTTTTTTTATTCAGTGACCAAAGTATA
AACAAAAACATCAAAATGGCTCCTCAATTACGTAATCTTCTTCAACGAAA
AGTTACTTCGACTATTGGAATTGGTATTGGTTTAGGATTAGCTTCTGCAT
TTACCTGGAAATTCGCTCACGCAGATCCCAAGAGAGCAAAATACGAAGCA
TTCTATAAAAACTATGATGCAGAGGCTGAAGCCAAAGCCCTTGAAGCAAG
ACTAGCTGCAGCTGGAAAATAGATATTTTGGAAGTGACCAACAATGTTTT
TTTAATTTTATTGATGAATATTGTGTAATTGAATTGTTTATAAAAAAGTT
CTTACATCAGATTTTTTTGATTCCGTCAATTTATTCTCCTTTAACCCATA
GAGAAAACAGTTTGAAAATCCATGCTAGTGCTGATTAAGTTAGGATTTAC
AATTCCTCAGCTTTCTGAAACATATTCTGACTATGACTGTTCCAATGCCC
CAAGAATTGATTTTTGATGACTTGGATAACTTAAGTTTTTCTTTGCACAG
TATACCTTAAGTGTATTGATTTTGGCATGTCCTTAATTTGGCGGTATTTA
ATTTGGCGGATTTCGGAATTTGTAAAATTTGGCGAATGGGGAAATTTATA
ATAAAAAATTACTTAGTTTTTTAATAAAATTTTAGGTTTTTACCTAAAAT
GATGATTTTATATAGAATTTTTATCTTTAAAAGATTTTGTTAAATTTGGT
GAGTGTTTTTGGCAGAGGGTCAATTTAAAAAATGTTGGCGGGTATTTGAA
TTTAATTCCAGCCAAAATTAATTCAAAAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025526XLOC_025526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041587-exon-sc0002923-1575043694:6433..8215TCONS_00041587-exon-sc0002923-1575043694:6433..8215Clytia hemisphaericaexon
TCONS_00041587-exon-sc0002923-1510915933:6433..8215TCONS_00041587-exon-sc0002923-1510915933:6433..8215Clytia hemisphaericaexon
TCONS_00041587-exon-sc0002923-1491911889:6433..8215TCONS_00041587-exon-sc0002923-1491911889:6433..8215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002923supercontigsc0002923:6433..8215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.288499	0.111796	0.458579	0.326916	1.62146	1.61025	0.976509	1.06647	0.0907896	0.0559944	0	0.283449	0.177871	0.33801	0.0969159	0.309582	0.0866896	0.0862445	0.177688	0.312618	0.160988	0.397536	0.064935	0.179278	0.0680624	1.21277	1.32887	1.32118	1.23081	0.829074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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