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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041581 ID=TCONS_00041581|Name=TCONS_00041581|organism=Clytia hemisphaerica|type=transcript|length=1134bp
TCTTGAGTTGTGATAATTGGATaaatactttctttttcagGATACCCGTT
TACGTGTTGGAGACCGGATACTTGCGGTAAACGGAAACACCCTGGTTGGT
GCTGGTTCTAACGAGGCTATGGATGTCATTAAAAAAGCCGGTAACCGATT
AAGTTTTCTGATAGCGAAATCAGACGATGACGTCATGAATCAGATACTTG
CAACGTCGACTTAAAAAGTGAGCACgaatttttttatactttttgaatta
atcaaatatctttttatacgccaattattttttataaaccattttttgca
aaatattttaatttctatTTTGTCCTACGAGGAGatgttttctttgatat
tttcaagCACTAACGTCACACACTTTGACACTACCTTTTCTTCATCCGAG
ATAAACTAGCCTTATCGaatgataaaatttcaaaattttcctgcACAGTT
ATTCACTTTTgagccttgaaatattcttaagtgATTCTTAAGGGCATCAA
ACTTTACTCACGGGTCTCTAATATATAGGTGTGGATCCAAGGGATTCGCT
TAAGTTAATAGATATATGTCCCTGCAAGCATTTTCAAAAGCCCAAAAAAT
AAcatggatttttttttgaaactttctcaCTCCACCTTCACATTGTTTTA
GCAGCTTGAAAGCTCAGATTCAAACCGAACTCAATATTAATATTCCCTAG
AACTCGATTCCATTCTCGAAGTAACATTTTTGTGATAGTTATGATGACCT
TGCCGAAATAGacttttttgatatattttctaGATTTGCCGAAATAGact
tttttgatatattttctaGATTTCAATGCTTAGGCTTGGTACTCACGTAT
TAAAAAATTGGCGCTTAACACtagtcacacgcgtttaatggtagtcacac
gcgtttaatgttagccacacgcgtttaatgttagtcacacgcgtttaatg
atagtcacacgcgtttaatgatagtcacacgcgtttaatgttagtcacac
gcgtttaatggtagtcacacgcgtttaatgttagtcacacgcgtttaatg
ttagtcacacgcgtttaatgttagtcacacgcgtttaatgttagtcacac
gcgtttaatgATAGTCACACGCGATTAAAGTTAG Run BLAST on NCBI transcript from alignment at sc0002922:3300..4727+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041581 ID=TCONS_00041581|Name=TCONS_00041581|organism=Clytia hemisphaerica|type=transcript|length=1428bp|location=Sequence derived from alignment at sc0002922:3300..4727+ (Clytia hemisphaerica)
TCTTGAGTTGTGATAATTGGATaaatactttctttttcagGATACCCGTT
TACGTGTTGGAGACCGGATACTTGCGGTAAACGGAAACACCCTGGTTGGT
GCTGGTTCTAACGAGTAAGCGAGACTTATTTGAATTTTCAACTCATTTCC
TGATGTTGTGCATTTAGAAAAGTTAAGGAAAGTCTGGagtcaaaatatta
taaaagtGAAAGTAATAGGTCAAATTAAAAGGaattaaaatcagaaaata
aattaaaattttgcccAATCAATACTTCAGTACGGTGTCACATGACCTAT
CACGCTACTGGGGATGGTACTAAATTCACAAGGTTAGATAAATTGCATTT
CTCCATCCATACAAAAGAAagcttttttaattaatttatattattttttt
gctttcagGGCTATGGATGTCATTAAAAAAGCCGGTAACCGATTAAGTTT
TCTGATAGCGAAATCAGACGATGACGTCATGAATCAGATACTTGCAACGT
CGACTTAAAAAGTGAGCACgaatttttttatactttttgaattaatcaaa
tatctttttatacgccaattattttttataaaccattttttgcaaaatat
tttaatttctatTTTGTCCTACGAGGAGatgttttctttgatattttcaa
gCACTAACGTCACACACTTTGACACTACCTTTTCTTCATCCGAGATAAAC
TAGCCTTATCGaatgataaaatttcaaaattttcctgcACAGTTATTCAC
TTTTgagccttgaaatattcttaagtgATTCTTAAGGGCATCAAACTTTA
CTCACGGGTCTCTAATATATAGGTGTGGATCCAAGGGATTCGCTTAAGTT
AATAGATATATGTCCCTGCAAGCATTTTCAAAAGCCCAAAAAATAAcatg
gatttttttttgaaactttctcaCTCCACCTTCACATTGTTTTAGCAGCT
TGAAAGCTCAGATTCAAACCGAACTCAATATTAATATTCCCTAGAACTCG
ATTCCATTCTCGAAGTAACATTTTTGTGATAGTTATGATGACCTTGCCGA
AATAGacttttttgatatattttctaGATTTGCCGAAATAGacttttttg
atatattttctaGATTTCAATGCTTAGGCTTGGTACTCACGTATTAAAAA
ATTGGCGCTTAACACtagtcacacgcgtttaatggtagtcacacgcgttt
aatgttagccacacgcgtttaatgttagtcacacgcgtttaatgatagtc
acacgcgtttaatgatagtcacacgcgtttaatgttagtcacacgcgttt
aatggtagtcacacgcgtttaatgttagtcacacgcgtttaatgttagtc
acacgcgtttaatgttagtcacacgcgtttaatgttagtcacacgcgttt
aatgATAGTCACACGCGATTAAAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041581-exon-sc0002922-1491911889:3300..3413 | TCONS_00041581-exon-sc0002922-1491911889:3300..3413 | Clytia hemisphaerica | exon |
| TCONS_00041581-exon-sc0002922-1510915933:3300..3413 | TCONS_00041581-exon-sc0002922-1510915933:3300..3413 | Clytia hemisphaerica | exon |
| TCONS_00041581-exon-sc0002922-1575043694:3300..3413 | TCONS_00041581-exon-sc0002922-1575043694:3300..3413 | Clytia hemisphaerica | exon |
| TCONS_00041581-exon-sc0002922-1491911889:3708..4727 | TCONS_00041581-exon-sc0002922-1491911889:3708..4727 | Clytia hemisphaerica | exon |
| TCONS_00041581-exon-sc0002922-1510915933:3708..4727 | TCONS_00041581-exon-sc0002922-1510915933:3708..4727 | Clytia hemisphaerica | exon |
| TCONS_00041581-exon-sc0002922-1575043694:3708..4727 | TCONS_00041581-exon-sc0002922-1575043694:3708..4727 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002922 | supercontig | sc0002922:3300..4727 + |
Blast
The following BLAST results are available for this feature:
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