TCONS_00041578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041578
Unique NameTCONS_00041578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041578 ID=TCONS_00041578|Name=TCONS_00041578|organism=Clytia hemisphaerica|type=transcript|length=653bp
AATGATTTAAATAATTTCGTCTTGTGCTCCCTCGCACGTCATTTAGTATC
CTGTATTCTCTACAGAAATCTTCATAAATTGCTGTTGTGTGCCTTTAGAT
TGCTAATGGAACTGTGACGAAGTTGCTTGAATTTGCTAGAAGTTACTAGC
TGAGAGCTTGCCGACGTGTGAATAGCATCACTTGGATAACCTTTTTGAAC
TGCACGCTTCTCATGTTTATTTCTCGGAACGcaaattaaaagcaaaattg
atattttatcCGAAACGgtaaataaattcataaatGTTTGTTAGAAGATA
ACAGTTCATAAGACAGCTGGTTTGATCATCATGAGTGTTGAATTCAACGT
GTAATCAGGGCTTAACGTGGACAACCTCATCCCAATCCAGCTATCCTCTA
TAGGTTTATATGAATCATTTTCTTCCAACCAAATGCCGTTTGGCTTAAAT
ATGCCACAATATTCGTACCAGAATCCACCACGATTGTACATTTCTGCACA
GTTGTGACTTGCCAAGTCATTGTCAGAATCAAAAGTCGTAAAACGCATGT
TATACTGCGTTTCAAAAACATTAAGCCCTCCGTTCATCAGTCCACTGACc
tacaacaaagaaaaaacacCACATTCATATGATAGCACCCAAAAAAAAGC
CTG
Run BLAST on NCBI

transcript from alignment at sc0002920:1281..1933

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041578 ID=TCONS_00041578|Name=TCONS_00041578|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at sc0002920:1281..1933 (Clytia hemisphaerica)
CAGGCTTTTTTTTGGGTGCTATCATATGAATGTGgtgttttttctttgtt
gtagGTCAGTGGACTGATGAACGGAGGGCTTAATGTTTTTGAAACGCAGT
ATAACATGCGTTTTACGACTTTTGATTCTGACAATGACTTGGCAAGTCAC
AACTGTGCAGAAATGTACAATCGTGGTGGATTCTGGTACGAATATTGTGG
CATATTTAAGCCAAACGGCATTTGGTTGGAAGAAAATGATTCATATAAAC
CTATAGAGGATAGCTGGATTGGGATGAGGTTGTCCACGTTAAGCCCTGAT
TACACGTTGAATTCAACACTCATGATGATCAAACCAGCTGTCTTATGAAC
TGTTATCTTCTAACAAACatttatgaatttatttacCGTTTCGgataaaa
tatcaattttgcttttaatttgCGTTCCGAGAAATAAACATGAGAAGCGT
GCAGTTCAAAAAGGTTATCCAAGTGATGCTATTCACACGTCGGCAAGCTC
TCAGCTAGTAACTTCTAGCAAATTCAAGCAACTTCGTCACAGTTCCATTA
GCAATCTAAAGGCACACAACAGCAATTTATGAAGATTTCTGTAGAGAATA
CAGGATACTAAATGACGTGCGAGGGAGCACAAGACGAAATTATTTAAATC
ATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025518XLOC_025518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041578-exon-sc0002920-1491911889:1281..1933TCONS_00041578-exon-sc0002920-1491911889:1281..1933Clytia hemisphaericaexon
TCONS_00041578-exon-sc0002920-1510915933:1281..1933TCONS_00041578-exon-sc0002920-1510915933:1281..1933Clytia hemisphaericaexon
TCONS_00041578-exon-sc0002920-1575043694:1281..1933TCONS_00041578-exon-sc0002920-1575043694:1281..1933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002920supercontigsc0002920:1281..1933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11867	0.779198	0.904723	1.15067	0.323268	0	0.205461	0.0961748	0.0673343	0.166809	0.56668	0.0532162	11.1067	9.87878	0.408353	0.389534	0.179953	0.184446	11.8917	11.1994	1.54513	1.35659	1.74073	5.41407	4.03214	7.12062	0.328696	0	0.266064	0.0903592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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