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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041566 ID=TCONS_00041566|Name=TCONS_00041566|organism=Clytia hemisphaerica|type=transcript|length=931bp
CGAAAGCCTACTACCAAAAGATCTATTCCTTTTCAGGTGGACGACAGCCA
GCAAAACCTAAAAACGCCAACAATTTAGTAGCCCCGAAGGAGATAACagt
gcaaaaaatgaaaacaaagccGAAACAGACAACCATGAAGTACCAACCAA
AGGGCCCAAGAGAATTTGTTCCGTACGATTATCCCGAATACTCAATTGAG
AATATCAAAGAGGCTTGTAAACGTCACTTTAAAGACAATCGACCCTGCGA
TGTCTTGGTCTGTGATAAAGGACCGTCAGCCACACGGATAGACCAATTGC
TAAAAACTGACGTTTTTTATGTCCGCTTTTTAAATGACGAGTTATCATCT
TCTTCTCTTAATCCTTCTGCCTTGGTGAGAAAACGCAAAGCAGCAGCTAC
TAACAATGAGGatttatcatttttcacttCAGTTGCATCAGTTCCACCAG
CTCCATCAATGAAACCAAAATCACCAAAGGCGAAATTGCAACCTGTAGAG
TCAACATTCCCAAAAAGCCTTTCTGCATTAGAAATGATGAACTTTGGGGC
TTTgattaaaaagaaatcaaaaactgAGACCATCGAAGTAGAGGAGTTTG
ACGTTAGCGAAAAAAGTTGGGCAAGTATTGGGTGTGTGAACTTCCAAATT
GACGAGAAACCACTTGGTGAGGGGGGTTTCCGCCTTGCATATTCAGCAAA
GAGTGCAGAGAAAGTGTTTTCTGGAAAAAGGTGGGTGATCAAGATGTAAA
ACGAACGGGCCAAGGAggttatcaaaaattttaaaatcagcaACGAGGAC
CATGCAAGAAAAAATGTGCAAATGCACCTACTAGCAAGAAACTTATGTGG
ACGATACCGGACTAAGATCAAGGCAAAATTTCCAGAAATTGATGGCAACC
TTTACTTCCACAAGATATACTTTGGAAAAAT Run BLAST on NCBI protein sequence of TCONS_00041566-protein >TCONS_00041566-protein ID=TCONS_00041566-protein|Name=TCONS_00041566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
KAYYQKIYSFSGGRQPAKPKNANNLVAPKEITVQKMKTKPKQTTMKYQPK
GPREFVPYDYPEYSIENIKEACKRHFKDNRPCDVLVCDKGPSATRIDQLL
KTDVFYVRFLNDELSSSSLNPSALVRKRKAAATNNEDLSFFTSVASVPPA
PSMKPKSPKAKLQPVESTFPKSLSALEMMNFGALIKKKSKTETIEVEEFD
VSEKSWASIGCVNFQIDEKPLGEGGFRLAYSAKSAEKVFSGKRWVIKM Run BLAST on NCBI transcript from alignment at sc0002911:11469..12399 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041566 ID=TCONS_00041566|Name=TCONS_00041566|organism=Clytia hemisphaerica|type=transcript|length=931bp|location=Sequence derived from alignment at sc0002911:11469..12399 (Clytia hemisphaerica)
ATTTTTCCAAAGTATATCTTGTGGAAGTAAAGGTTGCCATCAATTTCTGG
AAATTTTGCCTTGATCTTAGTCCGGTATCGTCCACATAAGTTTCTTGCTA
GTAGGTGCATTTGCACATTTTTTCTTGCATGGTCCTCGTtgctgatttta
aaatttttgataaccTCCTTGGCCCGTTCGTTTTACATCTTGATCACCCA
CCTTTTTCCAGAAAACACTTTCTCTGCACTCTTTGCTGAATATGCAAGGC
GGAAACCCCCCTCACCAAGTGGTTTCTCGTCAATTTGGAAGTTCACACAC
CCAATACTTGCCCAACTTTTTTCGCTAACGTCAAACTCCTCTACTTCGAT
GGTCTcagtttttgatttctttttaatcAAAGCCCCAAAGTTCATCATTT
CTAATGCAGAAAGGCTTTTTGGGAATGTTGACTCTACAGGTTGCAATTTC
GCCTTTGGTGATTTTGGTTTCATTGATGGAGCTGGTGGAACTGATGCAAC
TGaagtgaaaaatgataaatCCTCATTGTTAGTAGCTGCTGCTTTGCGTT
TTCTCACCAAGGCAGAAGGATTAAGAGAAGAAGATGATAACTCGTCATTT
AAAAAGCGGACATAAAAAACGTCAGTTTTTAGCAATTGGTCTATCCGTGT
GGCTGACGGTCCTTTATCACAGACCAAGACATCGCAGGGTCGATTGTCTT
TAAAGTGACGTTTACAAGCCTCTTTGATATTCTCAATTGAGTATTCGGGA
TAATCGTACGGAACAAATTCTCTTGGGCCCTTTGGTTGGTACTTCATGGT
TGTCTGTTTCggctttgttttcattttttgcactGTTATCTCCTTCGGGG
CTACTAAATTGTTGGCGTTTTTAGGTTTTGCTGGCTGTCGTCCACCTGAA
AAGGAATAGATCTTTTGGTAGTAGGCTTTCG Coding sequence (CDS) from alignment at sc0002911:11469..12399 >TCONS_00041566 ID=TCONS_00041566|Name=TCONS_00041566|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0002911:11469..12399 (Clytia hemisphaerica)
TTACATCTTGATCACCCACCTTTTTCCAGAAAACACTTTCTCTGCACTCT
TTGCTGAATATGCAAGGCGGAAACCCCCCTCACCAAGTGGTTTCTCGTCA
ATTTGGAAGTTCACACACCCAATACTTGCCCAACTTTTTTCGCTAACGTC
AAACTCCTCTACTTCGATGGTCTcagtttttgatttctttttaatcAAAG
CCCCAAAGTTCATCATTTCTAATGCAGAAAGGCTTTTTGGGAATGTTGAC
TCTACAGGTTGCAATTTCGCCTTTGGTGATTTTGGTTTCATTGATGGAGC
TGGTGGAACTGATGCAACTGaagtgaaaaatgataaatCCTCATTGTTAG
TAGCTGCTGCTTTGCGTTTTCTCACCAAGGCAGAAGGATTAAGAGAAGAA
GATGATAACTCGTCATTTAAAAAGCGGACATAAAAAACGTCAGTTTTTAG
CAATTGGTCTATCCGTGTGGCTGACGGTCCTTTATCACAGACCAAGACAT
CGCAGGGTCGATTGTCTTTAAAGTGACGTTTACAAGCCTCTTTGATATTC
TCAATTGAGTATTCGGGATAATCGTACGGAACAAATTCTCTTGGGCCCTT
TGGTTGGTACTTCATGGTTGTCTGTTTCggctttgttttcattttttgca
ctGTTATCTCCTTCGGGGCTACTAAATTGTTGGCGTTTTTAGGTTTTGCT
GGCTGTCGTCCACCTGAAAAGGAATAGATCTTTTGGTAGTAGGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041566-exon-sc0002911-1491911889:11469..12399 | TCONS_00041566-exon-sc0002911-1491911889:11469..12399 | Clytia hemisphaerica | exon |
| TCONS_00041566-exon-sc0002911-1510915933:11469..12399 | TCONS_00041566-exon-sc0002911-1510915933:11469..12399 | Clytia hemisphaerica | exon |
| TCONS_00041566-exon-sc0002911-1575043694:11469..12399 | TCONS_00041566-exon-sc0002911-1575043694:11469..12399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002911 | supercontig | sc0002911:11469..12399 . |
Blast
The following BLAST results are available for this feature:
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