TCONS_00041564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041564
Unique NameTCONS_00041564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041564 ID=TCONS_00041564|Name=TCONS_00041564|organism=Clytia hemisphaerica|type=transcript|length=412bp
CTTGACTCAACCAAAGCTCCAAAAGAAAAGATCATAAAGACTTTGATCTA
TGGCATTCGTCCAAGTGGCAATCAAGCCGAATACGCCCTTCGTTCGATCT
CGAAATCCTTCAAAGATCAATATTCCAAAGTTGACGAAATCCTTCAACAC
GACGTCTATGTTGATGATTGTATAACAGGTGCATCAACTATTCCAGATGC
ACACCAAAGAGCTGATGAGATTGAATTCGTCCTGAGTCATGGTAATTTCA
AGCTAAAAGGAATCACGTTTTCCGGATCTGATCCACCAGAATAGCTAACG
GATGATGGTATCACAATTGGCGTCGGAGGCATGATATGGCACCCCAAAAC
CGATGAGCTCTCAATCAATATATCcgaattgaatttttcaaagaaacgtA
GAGGGAAGAAAT
Run BLAST on NCBI

transcript from alignment at sc0002911:5576..5987

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041564 ID=TCONS_00041564|Name=TCONS_00041564|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0002911:5576..5987 (Clytia hemisphaerica)
ATTTCTTCCCTCTacgtttctttgaaaaattcaattcgGATATATTGATT
GAGAGCTCATCGGTTTTGGGGTGCCATATCATGCCTCCGACGCCAATTGT
GATACCATCATCCGTTAGCTATTCTGGTGGATCAGATCCGGAAAACGTGA
TTCCTTTTAGCTTGAAATTACCATGACTCAGGACGAATTCAATCTCATCA
GCTCTTTGGTGTGCATCTGGAATAGTTGATGCACCTGTTATACAATCATC
AACATAGACGTCGTGTTGAAGGATTTCGTCAACTTTGGAATATTGATCTT
TGAAGGATTTCGAGATCGAACGAAGGGCGTATTCGGCTTGATTGCCACTT
GGACGAATGCCATAGATCAAAGTCTTTATGATCTTTTCTTTTGGAGCTTT
GGTTGAGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025506XLOC_025506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041564-exon-sc0002911-1491911889:5576..5987TCONS_00041564-exon-sc0002911-1491911889:5576..5987Clytia hemisphaericaexon
TCONS_00041564-exon-sc0002911-1510915933:5576..5987TCONS_00041564-exon-sc0002911-1510915933:5576..5987Clytia hemisphaericaexon
TCONS_00041564-exon-sc0002911-1575043694:5576..5987TCONS_00041564-exon-sc0002911-1575043694:5576..5987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002911supercontigsc0002911:5576..5987 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22337	0.582601	0.539703	0	1.09777	0.37248	0.579831	0.210353	0.294546	0.890714	0.354125	0	0.395169	0.241417	0.0992386	0.515521	0.655985	0.403418	0.371563	0	1.66682	0.940057	1.31369	0.800684	5.70942	3.10472	0.367925	0	4.64658	2.44523
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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