TCONS_00041561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041561
Unique NameTCONS_00041561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041561 ID=TCONS_00041561|Name=TCONS_00041561|organism=Clytia hemisphaerica|type=transcript|length=513bp
ATCAAAAGTTCGTGTCAACGTTGCAAGTTTTTGGCCAAACGAACCATCGA
CATGGCTATGGGTCCAATCTCCAGATGCAATATCACCATAGCTCCAGCAT
TCTCCTACACCCAAGTCGACCTATCTGGACCGTTTCAATGCTACACACCA
CATCACAAACGAAAGACAGCCAAAATATGGTTGGTTGTCTTCTGCTGTTG
CTCTACATCAGCTGTCAAAATCAAGGTTTTGGACGATTATGGAACGACAT
CATTCATCCTTGCTTTCAATCGCTTCTCCTGTGACCACGGTTACCCGAAA
CGACTTCTTTGTGACGAAGGAGGTCAACTCATCAAAACCTGCAAAGAAAT
GCGACTTGATTTCATTGATATCAAATCCAAACTGATGAAACAAGCACGTG
TTGAGTTCGAATTCTGTCCAGTTCAAGGCCACTCAATGCATGGAAAAGTA
GAACGAAAAATTCGTGAAATCAACAGTTCGATCGAAAAATCTGTTCACAA
CCAACGTCTTTCA
Run BLAST on NCBI

protein sequence of TCONS_00041561-protein

>TCONS_00041561-protein ID=TCONS_00041561-protein|Name=TCONS_00041561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
IKSSCQRCKFLAKRTIDMAMGPISRCNITIAPAFSYTQVDLSGPFQCYTP
HHKRKTAKIWLVVFCCCSTSAVKIKVLDDYGTTSFILAFNRFSCDHGYPK
RLLCDEGGQLIKTCKEMRLDFIDIKSKLMKQARVEFEFCPVQGHSMHGKV
ERKIREINSSIEKSVHNQRLS
Run BLAST on NCBI

transcript from alignment at sc0002911:4031..4543

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041561 ID=TCONS_00041561|Name=TCONS_00041561|organism=Clytia hemisphaerica|type=transcript|length=513bp|location=Sequence derived from alignment at sc0002911:4031..4543 (Clytia hemisphaerica)
TGAAAGACGTTGGTTGTGAACAGATTTTTCGATCGAACTGTTGATTTCAC
GAATTTTTCGTTCTACTTTTCCATGCATTGAGTGGCCTTGAACTGGACAG
AATTCGAACTCAACACGTGCTTGTTTCATCAGTTTGGATTTGATATCAAT
GAAATCAAGTCGCATTTCTTTGCAGGTTTTGATGAGTTGACCTCCTTCGT
CACAAAGAAGTCGTTTCGGGTAACCGTGGTCACAGGAGAAGCGATTGAAA
GCAAGGATGAATGATGTCGTTCCATAATCGTCCAAAACCTTGATTTTGAC
AGCTGATGTAGAGCAACAGCAGAAGACAACCAACCATATTTTGGCTGTCT
TTCGTTTGTGATGTGGTGTGTAGCATTGAAACGGTCCAGATAGGTCGACT
TGGGTGTAGGAGAATGCTGGAGCTATGGTGATATTGCATCTGGAGATTGG
ACCCATAGCCATGTCGATGGTTCGTTTGGCCAAAAACTTGCAACGTTGAC
ACGAACTTTTGAT

Coding sequence (CDS) from alignment at sc0002911:4031..4543

>TCONS_00041561 ID=TCONS_00041561|Name=TCONS_00041561|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0002911:4031..4543 (Clytia hemisphaerica)
TGAAAGACGTTGGTTGTGAACAGATTTTTCGATCGAACTGTTGATTTCAC
GAATTTTTCGTTCTACTTTTCCATGCATTGAGTGGCCTTGAACTGGACAG
AATTCGAACTCAACACGTGCTTGTTTCATCAGTTTGGATTTGATATCAAT
GAAATCAAGTCGCATTTCTTTGCAGGTTTTGATGAGTTGACCTCCTTCGT
CACAAAGAAGTCGTTTCGGGTAACCGTGGTCACAGGAGAAGCGATTGAAA
GCAAGGATGAATGATGTCGTTCCATAATCGTCCAAAACCTTGATTTTGAC
AGCTGATGTAGAGCAACAGCAGAAGACAACCAACCATATTTTGGCTGTCT
TTCGTTTGTGATGTGGTGTGTAGCATTGAAACGGTCCAGATAGGTCGACT
TGGGTGTAGGAGAATGCTGGAGCTATGGTGATATTGCATCTGGAGATTGG
ACCCATAGCCATGTCGATGGTTCGTTTGGCCAAAAACTTGCAACGTTGAC
ACGAACTTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025503XLOC_025503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041561-exon-sc0002911-1491911889:4031..4543TCONS_00041561-exon-sc0002911-1491911889:4031..4543Clytia hemisphaericaexon
TCONS_00041561-exon-sc0002911-1510915933:4031..4543TCONS_00041561-exon-sc0002911-1510915933:4031..4543Clytia hemisphaericaexon
TCONS_00041561-exon-sc0002911-1575043694:4031..4543TCONS_00041561-exon-sc0002911-1575043694:4031..4543Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041561-proteinTCONS_00041561-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002911supercontigsc0002911:4031..4543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43959	1.36883	0.457685	0	0.701318	0.124364	0.450121	0.421398	0	0.365443	0	0.270533	0.304511	1.04183	0.389235	0	0.587257	1.06739	0.248116	0.472583	1.89781	1.58394	1.10901	0.465854	3.53692	2.19272	0.480069	0.694493	4.31539	2.81703
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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