TCONS_00041559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041559
Unique NameTCONS_00041559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041559 ID=TCONS_00041559|Name=TCONS_00041559|organism=Clytia hemisphaerica|type=transcript|length=198bp
NNTTTCATTTGCTCGATCCGTCCTATCTAATTGCTTGCGAGTCATATGTA
GCGTCTCCTGTTGCTCTTCCAGTTCAGTACGTACCGATTGAACCTTTTTG
CGAGCTAGTAAAAACTCCGACTCTTTCAACGATACATCATCTTGAGCTTT
CGAAACCTGTCGAGAAAATACATGAATTCGTAACTTTTTCATGAAGGA
Run BLAST on NCBI

transcript from alignment at sc0002910:366..563

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041559 ID=TCONS_00041559|Name=TCONS_00041559|organism=Clytia hemisphaerica|type=transcript|length=198bp|location=Sequence derived from alignment at sc0002910:366..563 (Clytia hemisphaerica)
TCCTTCATGAAAAAGTTACGAATTCATGTATTTTCTCGACAGGTTTCGAA
AGCTCAAGATGATGTATCGTTGAAAGAGTCGGAGTTTTTACTAGCTCGCA
AAAAGGTTCAATCGGTACGTACTGAACTGGAAGAGCAACAGGAGACGCTA
CATATGACTCGCAAGCAATTAGATAGGACGGATCGAGCAAATGAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025501XLOC_025501Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041559-exon-sc0002910-1491911889:366..563TCONS_00041559-exon-sc0002910-1491911889:366..563Clytia hemisphaericaexon
TCONS_00041559-exon-sc0002910-1510915933:366..563TCONS_00041559-exon-sc0002910-1510915933:366..563Clytia hemisphaericaexon
TCONS_00041559-exon-sc0002910-1575043694:366..563TCONS_00041559-exon-sc0002910-1575043694:366..563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002910supercontigsc0002910:366..563 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	3.87965	0	53.1394	45.6429	59.4716	39.1798	11.5498	14.3063	12.1502	9.12811	9.11542	8.28315	15.5654	16.7041	6.43064	19.7736	7.28488	5.71733	1.65647	0	1.96438	0	45.986	26.2665	0	0	0	1.9374
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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