|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041558 ID=TCONS_00041558|Name=TCONS_00041558|organism=Clytia hemisphaerica|type=transcript|length=1076bp
CCTTTCTCAAATCTCTGATCTCTCTTTCTATTTAATTATTTAGACATCCT
TACATCAAATGAAATCAGACTTCTTTGTCcattttagtgcaaaatttgat
gaagaaacaGAACGAAATGGAGACCGCCGAACGCATCGCTTTCAATGATT
TCTCATCTGCCATTCGGTCTTCACACGAGAAAGAGCGGTCGAGAGTGGAA
CGCACCAAGTACTGGTCCATCATCGCCTCTGTATCTGGTACTATACTagG
TTTTGTTCTTTCATCGTTCGTCACTCATTACcgtttgaagaaaattgaaa
acgtATCAGAACAAAGATGGATACAATCCTCCAAATCTGTTGAAGACATG
TTGTCAAACTTTCATTCCAAAACTATGGAGGAGATCTCAACGCTTTCGAA
CCTACAAACAGCCACGCCGAAAGAAGAAGTCAACTCGCAAAACATGGATG
AAGTGCTCGATCATTTGCAAAACCATTTGAATCAAGTAGACACTAAATGT
GACAAAGCTTTATACATAGTAGATGAAATCAATCAAGAACTTAAAAGAAT
AAAGTCCTTTGATGGAAACTTGCAACCGCTTCACCATCCTGTGACGTCCA
CTTCTTCTCAAACCTCCAATATCCAGTCAACCAGCCCAAACATTCAAATA
CTCCAAGATACAAAAACTTCTGATCATAAAAGCTTCCCTGAAAACGATTC
AGCTCAGCAGATTCCAACCGTTACACCTCCAGTACCCACTGAAAATCAGG
TTGAATACATTGGGGCTATAAACATTGCTAGTCCAACTGGCGGGAACATC
ACAACGCCTCCCATTAAACAGTACATGCCTCTTCTCATCTTTGTAGGCTC
TGGAGCACTATTAATTTACAGTATGATGGGTCAGTTTtagatagaatttt
tttttttcattttcgaaaGAATTGTTAAGagatttagaatttatttttta
aatagatGCATTATAACAAAATACTATTGTATGGAACAGATTTAGCCAGG
CATTCTCCAAAATTAAACAGTTTGAtcgttcgccaaaataaattctcgcc
aaTATTAAAAATGATCAGAAACCTCC Run BLAST on NCBI protein sequence of TCONS_00041558-protein >TCONS_00041558-protein ID=TCONS_00041558-protein|Name=TCONS_00041558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MKKQNEMETAERIAFNDFSSAIRSSHEKERSRVERTKYWSIIASVSGTIL
GFVLSSFVTHYRLKKIENVSEQRWIQSSKSVEDMLSNFHSKTMEEISTLS
NLQTATPKEEVNSQNMDEVLDHLQNHLNQVDTKCDKALYIVDEINQELKR
IKSFDGNLQPLHHPVTSTSSQTSNIQSTSPNIQILQDTKTSDHKSFPEND
SAQQIPTVTPPVPTENQVEYIGAINIASPTGGNITTPPIKQYMPLLIFVG
SGALLIYSMMGQF Run BLAST on NCBI transcript from alignment at sc0002910:7150..8332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041558 ID=TCONS_00041558|Name=TCONS_00041558|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at sc0002910:7150..8332+ (Clytia hemisphaerica)
CCTTTCTCAAATCTCTGATCTCTCTTTCTATTTAATTATTTAGACATCCT
TACATCAAATGAAATCAGACTTCTTTGTCcattttagtgcaaaatttgat
gaagaaacaGAACGAAATGGAGACCGCCGAACGCATCGCTTTCAATGATT
TCTCATCTGCCATTCGGTCTTCACACGAGAAAGAGCGGTCGAGAGTGGAA
CGCACCAAGTACTGGTCCATCATCGCCTCTGTATCTGGTACTATACTagg
tattcaacttttttgcaacatttaaaAATTTGCATAGTTCATTCAAATCT
TTTTCcaagaaatttcgaattttaacCTAAAATGATCCCTTTGATTTTCT
GTGCAGGTTTTGTTCTTTCATCGTTCGTCACTCATTACcgtttgaagaaa
attgaaaacgtATCAGAACAAAGATGGATACAATCCTCCAAATCTGTTGA
AGACATGTTGTCAAACTTTCATTCCAAAACTATGGAGGAGATCTCAACGC
TTTCGAACCTACAAACAGCCACGCCGAAAGAAGAAGTCAACTCGCAAAAC
ATGGATGAAGTGCTCGATCATTTGCAAAACCATTTGAATCAAGTAGACAC
TAAATGTGACAAAGCTTTATACATAGTAGATGAAATCAATCAAGAACTTA
AAAGAATAAAGTCCTTTGATGGAAACTTGCAACCGCTTCACCATCCTGTG
ACGTCCACTTCTTCTCAAACCTCCAATATCCAGTCAACCAGCCCAAACAT
TCAAATACTCCAAGATACAAAAACTTCTGATCATAAAAGCTTCCCTGAAA
ACGATTCAGCTCAGCAGATTCCAACCGTTACACCTCCAGTACCCACTGAA
AATCAGGTTGAATACATTGGGGCTATAAACATTGCTAGTCCAACTGGCGG
GAACATCACAACGCCTCCCATTAAACAGTACATGCCTCTTCTCATCTTTG
TAGGCTCTGGAGCACTATTAATTTACAGTATGATGGGTCAGTTTtagata
gaatttttttttttcattttcgaaaGAATTGTTAAGagatttagaattta
ttttttaaatagatGCATTATAACAAAATACTATTGTATGGAACAGATTT
AGCCAGGCATTCTCCAAAATTAAACAGTTTGAtcgttcgccaaaataaat
tctcgccaaTATTAAAAATGATCAGAAACCTCC Coding sequence (CDS) from alignment at sc0002910:7150..8332+ >TCONS_00041558 ID=TCONS_00041558|Name=TCONS_00041558|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0002910:7150..8332+ (Clytia hemisphaerica)
atgaagaaacaGAACGAAATGGAGACCGCCGAACGCATCGCTTTCAATGA
TTTCTCATCTGCCATTCGGTCTTCACACGAGAAAGAGCGGTCGAGAGTGG
AACGCACCAAGTACTGGTCCATCATCGCCTCTGTATCTGGTACTATACTa
gGTTTTGTTCTTTCATCGTTCGTCACTCATTACcgtttgaagaaaattga
aaacgtATCAGAACAAAGATGGATACAATCCTCCAAATCTGTTGAAGACA
TGTTGTCAAACTTTCATTCCAAAACTATGGAGGAGATCTCAACGCTTTCG
AACCTACAAACAGCCACGCCGAAAGAAGAAGTCAACTCGCAAAACATGGA
TGAAGTGCTCGATCATTTGCAAAACCATTTGAATCAAGTAGACACTAAAT
GTGACAAAGCTTTATACATAGTAGATGAAATCAATCAAGAACTTAAAAGA
ATAAAGTCCTTTGATGGAAACTTGCAACCGCTTCACCATCCTGTGACGTC
CACTTCTTCTCAAACCTCCAATATCCAGTCAACCAGCCCAAACATTCAAA
TACTCCAAGATACAAAAACTTCTGATCATAAAAGCTTCCCTGAAAACGAT
TCAGCTCAGCAGATTCCAACCGTTACACCTCCAGTACCCACTGAAAATCA
GGTTGAATACATTGGGGCTATAAACATTGCTAGTCCAACTGGCGGGAACA
TCACAACGCCTCCCATTAAACAGTACATGCCTCTTCTCATCTTTGTAGGC
TCTGGAGCACTATTAATTTACAGTATGATGGGTCAGTTTtagatgaagaa
acaGAACGAAATGGAGACCGCCGAACGCATCGCTTTCAATGATTTCTCAT
CTGCCATTCGGTCTTCACACGAGAAAGAGCGGTCGAGAGTGGAACGCACC
AAGTACTGGTCCATCATCGCCTCTGTATCTGGTACTATACTagGTTTTGT
TCTTTCATCGTTCGTCACTCATTACcgtttgaagaaaattgaaaacgtAT
CAGAACAAAGATGGATACAATCCTCCAAATCTGTTGAAGACATGTTGTCA
AACTTTCATTCCAAAACTATGGAGGAGATCTCAACGCTTTCGAACCTACA
AACAGCCACGCCGAAAGAAGAAGTCAACTCGCAAAACATGGATGAAGTGC
TCGATCATTTGCAAAACCATTTGAATCAAGTAGACACTAAATGTGACAAA
GCTTTATACATAGTAGATGAAATCAATCAAGAACTTAAAAGAATAAAGTC
CTTTGATGGAAACTTGCAACCGCTTCACCATCCTGTGACGTCCACTTCTT
CTCAAACCTCCAATATCCAGTCAACCAGCCCAAACATTCAAATACTCCAA
GATACAAAAACTTCTGATCATAAAAGCTTCCCTGAAAACGATTCAGCTCA
GCAGATTCCAACCGTTACACCTCCAGTACCCACTGAAAATCAGGTTGAAT
ACATTGGGGCTATAAACATTGCTAGTCCAACTGGCGGGAACATCACAACG
CCTCCCATTAAACAGTACATGCCTCTTCTCATCTTTGTAGGCTCTGGAGC
ACTATTAATTTACAGTATGATGGGTCAGTTTtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041558-exon-sc0002910-1491911889:7150..7398 | TCONS_00041558-exon-sc0002910-1491911889:7150..7398 | Clytia hemisphaerica | exon |
| TCONS_00041558-exon-sc0002910-1510915933:7150..7398 | TCONS_00041558-exon-sc0002910-1510915933:7150..7398 | Clytia hemisphaerica | exon |
| TCONS_00041558-exon-sc0002910-1575043694:7150..7398 | TCONS_00041558-exon-sc0002910-1575043694:7150..7398 | Clytia hemisphaerica | exon |
| TCONS_00041558-exon-sc0002910-1491911889:7506..8332 | TCONS_00041558-exon-sc0002910-1491911889:7506..8332 | Clytia hemisphaerica | exon |
| TCONS_00041558-exon-sc0002910-1510915933:7506..8332 | TCONS_00041558-exon-sc0002910-1510915933:7506..8332 | Clytia hemisphaerica | exon |
| TCONS_00041558-exon-sc0002910-1575043694:7506..8332 | TCONS_00041558-exon-sc0002910-1575043694:7506..8332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002910 | supercontig | sc0002910:7150..8332 + |
Blast
The following BLAST results are available for this feature:
|
