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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041555 ID=TCONS_00041555|Name=TCONS_00041555|organism=Clytia hemisphaerica|type=transcript|length=885bp
GCAGTTTATGTTTTCAGTCGACTTTCTTTCCtacaactttttgatttttg
aatcttttgCAATCTTTGCACATCTGTATTTGTTGGGTAATGGCTTCGAA
TAACAACAGTCGTCCATCTTCCAAACGTTCGAGATCGAGAACTTGTGCTG
TTGTTGGTTGCAAGAGCAGTGATTATAGATTTTCAAAATGGGAAGATGAG
TGGTGTGACTTGCACCAGACAACATATTCAAACTCAGTTTGCACTTGTTT
ACCACCCTTCCAGTTGTTCACATTTCCCACTGAAAGAGAGAATCCGGAAG
CGAGAATGATTTGGCGAGAACTGATTAATCGCAGGGAaccatcaaataaa
aatttgttgtggTCACCTAGCAGGCACAAACAGTCGAGAGTGTGTTCTGT
CCATTTTCCTGACGGCATGCCAACAAAAACCAACCCCCACCCTACACTTT
TCCTCAATAATAATGTTGACATTGATGTTGCAAttggaaataaaaacaaa
actactACTAGGAGACGTCTAACCtataatattaataataatGATGATGA
TGCTGTTGTTCCCAACCCTACTGATGTCCCAAACCCTGAAATTGTTAATG
ATTCATCCCTAGCTATTGATTTTGATGTTTCACCTGGACACATTCCATCT
ACACGTGATGAATCTCCTATTAATGAACCAATAATTAATAATGGAAACCG
TCAATGTCTTTTTCTCccttctttctttgttttccgtCATGGTACGTACC
GtaatatgtttttttcttgCATGGTTACTGTAGCTAGCTTACTTTGTTTT
GGttggatgcttaaatctaaatattttgctgctttgaaAGAAATTAATAA
ACTCAAAGATGATCTTCACAAGAAAGAGCTGCTGC Run BLAST on NCBI protein sequence of TCONS_00041555-protein >TCONS_00041555-protein ID=TCONS_00041555-protein|Name=TCONS_00041555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MASNNNSRPSSKRSRSRTCAVVGCKSSDYRFSKWEDEWCDLHQTTYSNSV
CTCLPPFQLFTFPTERENPEARMIWRELINRREPSNKNLLWSPSRHKQSR
VCSVHFPDGMPTKTNPHPTLFLNNNVDIDVAIGNKNKTTTRRRLTYNINN
NDDDAVVPNPTDVPNPEIVNDSSLAIDFDVSPGHIPSTRDESPINEPIIN
NGNRQCLFLPSFFVFRHGTYRNMFFSCMVTVASLLCFGWMLKSKYFAALK
EINKLKDDLHKKELL Run BLAST on NCBI transcript from alignment at sc0002909:3715..4884+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041555 ID=TCONS_00041555|Name=TCONS_00041555|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at sc0002909:3715..4884+ (Clytia hemisphaerica)
GCAGTTTATGTTTTCAGTCGACTTTCTTTCCtacaactttttgatttttg
aatcttttgCAATCTTTGCACATCTGTATTTGTTGGGTAATGGCTTCGAA
TAACAACAGTCGTCCATCTTCCAAACGTTCGAGATCGAGAACTTGTGCTG
TTGTTGGTTGCAAGAGCAGTGATTATAGATTTTCAAAATGGGAAGATGAG
TGGTGTGACTTGCACCAGACAACATATTCAAACTCAGTTTGCACTTGTTT
ACCACCCTTCCAGTAAgtgattttttgtttatttaacaTGTGAAAACATA
AGTCAGGTTTATTTATTTCAGGTTTCAAGGTCAGATACATACAGATGACT
TAGTGTTGTTGGCACTTTATAAAGTGCCACAGCTTTCAGACTCTAATTTT
GAGGGAAAGGAAGACTGCATtcctttttttccatttctgaTAATGGGGCT
TGAATTTAATTTCCAAGATGGGGCTAAATCTTCAggtttgtcaatttttt
gcttgtttagtTAATTGAATAAcgaaaatccaatttttcctTCACAGGTT
GTTCACATTTCCCACTGAAAGAGAGAATCCGGAAGCGAGAATGATTTGGC
GAGAACTGATTAATCGCAGGGAaccatcaaataaaaatttgttgtggTCA
CCTAGCAGGCACAAACAGTCGAGAGTGTGTTCTGTCCATTTTCCTGACGG
CATGCCAACAAAAACCAACCCCCACCCTACACTTTTCCTCAATAATAATG
TTGACATTGATGTTGCAAttggaaataaaaacaaaactactACTAGGAGA
CGTCTAACCtataatattaataataatGATGATGATGCTGTTGTTCCCAA
CCCTACTGATGTCCCAAACCCTGAAATTGTTAATGATTCATCCCTAGCTA
TTGATTTTGATGTTTCACCTGGACACATTCCATCTACACGTGATGAATCT
CCTATTAATGAACCAATAATTAATAATGGAAACCGTCAATGTCTTTTTCT
CccttctttctttgttttccgtCATGGTACGTACCGtaatatgttttttt
cttgCATGGTTACTGTAGCTAGCTTACTTTGTTTTGGttggatgcttaaa
tctaaatattttgctgctttgaaAGAAATTAATAAACTCAAAGATGATCT
TCACAAGAAAGAGCTGCTGC Coding sequence (CDS) from alignment at sc0002909:3715..4884+ >TCONS_00041555 ID=TCONS_00041555|Name=TCONS_00041555|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0002909:3715..4884+ (Clytia hemisphaerica)
ATGGCTTCGAATAACAACAGTCGTCCATCTTCCAAACGTTCGAGATCGAG
AACTTGTGCTGTTGTTGGTTGCAAGAGCAGTGATTATAGATTTTCAAAAT
GGGAAGATGAGTGGTGTGACTTGCACCAGACAACATATTCAAACTCAGTT
TGCACTTGTTTACCACCCTTCCAGTTGTTCACATTTCCCACTGAAAGAGA
GAATCCGGAAGCGAGAATGATTTGGCGAGAACTGATTAATCGCAGGGAac
catcaaataaaaatttgttgtggTCACCTAGCAGGCACAAACAGTCGAGA
GTGTGTTCTGTCCATTTTCCTGACGGCATGCCAACAAAAACCAACCCCCA
CCCTACACTTTTCCTCAATAATAATGTTGACATTGATGTTGCAAttggaa
ataaaaacaaaactactACTAGGAGACGTCTAACCtataatattaataat
aatGATGATGATGCTGTTGTTCCCAACCCTACTGATGTCCCAAACCCTGA
AATTGTTAATGATTCATCCCTAGCTATTGATTTTGATGTTTCACCTGGAC
ACATTCCATCTACACGTGATGAATCTCCTATTAATGAACCAATAATTAAT
AATGGAAACCGTCAATGTCTTTTTCTCccttctttctttgttttccgtCA
TGGTACGTACCGtaatatgtttttttcttgCATGGTTACTGTAGCTAGCT
TACTTTGTTTTGGttggatgcttaaatctaaatattttgctgctttgaaA
GAAATTAATAAACTCAAAGATGATCTTCACAAGAAAGAGCTGCTGATGGC
TTCGAATAACAACAGTCGTCCATCTTCCAAACGTTCGAGATCGAGAACTT
GTGCTGTTGTTGGTTGCAAGAGCAGTGATTATAGATTTTCAAAATGGGAA
GATGAGTGGTGTGACTTGCACCAGACAACATATTCAAACTCAGTTTGCAC
TTGTTTACCACCCTTCCAGTTGTTCACATTTCCCACTGAAAGAGAGAATC
CGGAAGCGAGAATGATTTGGCGAGAACTGATTAATCGCAGGGAaccatca
aataaaaatttgttgtggTCACCTAGCAGGCACAAACAGTCGAGAGTGTG
TTCTGTCCATTTTCCTGACGGCATGCCAACAAAAACCAACCCCCACCCTA
CACTTTTCCTCAATAATAATGTTGACATTGATGTTGCAAttggaaataaa
aacaaaactactACTAGGAGACGTCTAACCtataatattaataataatGA
TGATGATGCTGTTGTTCCCAACCCTACTGATGTCCCAAACCCTGAAATTG
TTAATGATTCATCCCTAGCTATTGATTTTGATGTTTCACCTGGACACATT
CCATCTACACGTGATGAATCTCCTATTAATGAACCAATAATTAATAATGG
AAACCGTCAATGTCTTTTTCTCccttctttctttgttttccgtCATGGTA
CGTACCGtaatatgtttttttcttgCATGGTTACTGTAGCTAGCTTACTT
TGTTTTGGttggatgcttaaatctaaatattttgctgctttgaaAGAAAT
TAATAAACTCAAAGATGATCTTCACAAGAAAGAGCTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041555-exon-sc0002909-1491911889:3715..3976 | TCONS_00041555-exon-sc0002909-1491911889:3715..3976 | Clytia hemisphaerica | exon |
| TCONS_00041555-exon-sc0002909-1510915933:3715..3976 | TCONS_00041555-exon-sc0002909-1510915933:3715..3976 | Clytia hemisphaerica | exon |
| TCONS_00041555-exon-sc0002909-1575043694:3715..3976 | TCONS_00041555-exon-sc0002909-1575043694:3715..3976 | Clytia hemisphaerica | exon |
| TCONS_00041555-exon-sc0002909-1491911889:4262..4884 | TCONS_00041555-exon-sc0002909-1491911889:4262..4884 | Clytia hemisphaerica | exon |
| TCONS_00041555-exon-sc0002909-1510915933:4262..4884 | TCONS_00041555-exon-sc0002909-1510915933:4262..4884 | Clytia hemisphaerica | exon |
| TCONS_00041555-exon-sc0002909-1575043694:4262..4884 | TCONS_00041555-exon-sc0002909-1575043694:4262..4884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002909 | supercontig | sc0002909:3715..4884 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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