TCONS_00041554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041554
Unique NameTCONS_00041554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041554 ID=TCONS_00041554|Name=TCONS_00041554|organism=Clytia hemisphaerica|type=transcript|length=317bp
GGAGGATATATCCCTACCTAAAATCACTATTTGGAGAATTTAAATTTTGA
TGCCATTTCGTTCTTATGGGAGGAATGATGAAATTTATATAGTACAATGG
TCGTAAACATATTTAGGGATTAAATGCACTGGTCAAATGTATGTAAGATT
ATTTTTGGCCATTTGGTATTTCAAAATGCAACCGCTAAAGGTACGCGTAC
AAGATCGCCGTGCTTATTCGTTTCTTTTCATTCAAATAGCTCCGAGGTTC
AATGATTGAAGGTATGCTAGGTGTATCGGGTGCGCCAAGAAAAGTATACA
AGTTTGTCAAGATGTCC
Run BLAST on NCBI

transcript from alignment at sc0002907:10350..10666

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041554 ID=TCONS_00041554|Name=TCONS_00041554|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at sc0002907:10350..10666 (Clytia hemisphaerica)
GGACATCTTGACAAACTTGTATACTTTTCTTGGCGCACCCGATACACCTA
GCATACCTTCAATCATTGAACCTCGGAGCTATTTGAATGAAAAGAAACGA
ATAAGCACGGCGATCTTGTACGCGTACCTTTAGCGGTTGCATTTTGAAAT
ACCAAATGGCCAAAAATAATCTTACATACATTTGACCAGTGCATTTAATC
CCTAAATATGTTTACGACCATTGTACTATATAAATTTCATCATTCCTCCC
ATAAGAACGAAATGGCATCAAAATTTAAATTCTCCAAATAGTGATTTTAG
GTAGGGATATATCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025496XLOC_025496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041554-exon-sc0002907-1491911889:10350..10666TCONS_00041554-exon-sc0002907-1491911889:10350..10666Clytia hemisphaericaexon
TCONS_00041554-exon-sc0002907-1510915933:10350..10666TCONS_00041554-exon-sc0002907-1510915933:10350..10666Clytia hemisphaericaexon
TCONS_00041554-exon-sc0002907-1575043694:10350..10666TCONS_00041554-exon-sc0002907-1575043694:10350..10666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002907supercontigsc0002907:10350..10666 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.328438	0.320279	0	0	0.442918	0	0.844519	0.395314	0.553537	0.342823	0.332752	1.74991	1.09217	0.680538	0.186498	0	0.493115	1.01085	0.698275	1.82673	0	0.929347	0	0	0.35263	0.314714	2.70213	0.48063	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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