TCONS_00041550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041550
Unique NameTCONS_00041550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041550 ID=TCONS_00041550|Name=TCONS_00041550|organism=Clytia hemisphaerica|type=transcript|length=494bp
CTTACAAatcaacaagaaaaaaaaatctacttcagTATCGCCAATCTGCC
ACAAAAATACAGCCAACATGACTACCCCAAGCCCTCATGATTCACAAATN
GCAAGCCTTACAAatcaacaagaaaaaaaaatctacttcagTATCGCCAA
TCTGCCACAAAAATACAGCCAACATGACTACCACAAGCCCTCATGATTCA
CAAATACTGAAATCGCCAATTGCagatcaaaatttgataagTGAAAGAGA
AGAATTCGATGATGAAGGAGATTGCGGCAATACTTCTGTTGAAACATCAT
ACGACAAAGAGCATTGCAAAGATTTAAATAATGCATTTTTGGTGGCAGCT
TCAGATTGTTCCCAACCTAAATTCTCGCCGGTCAACACAGAAACAAAAGC
TGTTCCAATCCCTTCAAATGTTCACACCTCATCAAATGGTCTTTCTTGTC
CACCTATTGCCACAACATCACCTTGTAGTTATGGGAAAACATTC
Run BLAST on NCBI

protein sequence of TCONS_00041550-protein

>TCONS_00041550-protein ID=TCONS_00041550-protein|Name=TCONS_00041550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MIHKXQALQINKKKKSTSVSPICHKNTANMTTTSPHDSQILKSPIADQNL
ISEREEFDDEGDCGNTSVETSYDKEHCKDLNNAFLVAASDCSQPKFSPVN
TETKAVPIPSNVHTSSNGLSCPPIATTSPCSYGKTF
Run BLAST on NCBI

transcript from alignment at sc0002907:1006..3326+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041550 ID=TCONS_00041550|Name=TCONS_00041550|organism=Clytia hemisphaerica|type=transcript|length=2321bp|location=Sequence derived from alignment at sc0002907:1006..3326+ (Clytia hemisphaerica)
CTTACAAatcaacaagaaaaaaaaatctacttcagTATCGCCAATCTGCC
ACAAAAATACAGCCAACATGACTACCCCAAGCCCTCATGATTCACAAATN
GCAAGCCTTACAAatcaacaagaaaaaaaaatctacttcagTATCGCCAA
TCTGCCACAAAAATACAGCCAACATGACTACCACAAGCCCTCATGATTCA
CAAATACTGAAATCGCCAATTGCagatcaaaatttgataagTGAAAGAGA
AGAATTCGGTAAGGGTGTATGATGAATTTTATTCAATTAATTCTATTTCA
GCTCTTAGTTTTATTTTCACAGATCAATGGTTTACTGTGCAGTTAAAAAA
TCCATTCCTTAGAATAGACTACCAATGTCCGCGTCAATGAAGTAGTTATC
CATTACTATCCTACTTCTCTCCTTTTCAGGGAGTTGCAGGTTGCATTGAA
GTAGGGAAAAAATTCATATAATGAAGATCAATCCTCAATTGTTTGTTTGA
TTAACATTTAGGATTTCGTTTTTCATTAGTTTAACAGCTTTCAGCCTTTG
TATAGTAAAAAGAAAGGGTAAAAATAGAGGTTTTcgtactttttcttttt
ttcgattGCAATGTTAGCTACGAAAAAGATAATCCAGGTAATTATTCAGT
AAACACTTTTCTTTATGATTTACATTAATAAGATGAAATAATATTGAACG
GCAAACATATCAATTCTCATTTAGaggaatagaaaaaaaaatctattggT
CCAGATGTTGGCATAACTTTATTGGACGAAAACATTTAAGTAATACTGAA
TTAAGTAATACTGAAACAAACAAAATAGCTAGTGTTAAAACAGTTCTATT
GTCTGTCGATTTACAGCATCTATATGTTAACTTTAAGGTATCATCGACAA
AGAGGATAGTTCCTGAAAAAATGTCAAGCTTGATTAATTAAGTCTTTGAA
CTCTTTGGACTGATGTGGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TATGATAAAAAgggtttttcatcgattttcagAGATTTCAGGTGTTTGAC
GTTTTGGGGGCTGGGTGGGTGGGTTAACTTTAAAAACGTCGATTgacgtt
tttctaacctaaaatcgatttgtgactgaccccttattaacaaaacaaaa
acaattctatCAAATATTGACATTGTTCCTAAggactcaaaaaaaatttc
aatcgatATTGATATTGATATAATATTGATTTTAGATGATGAAGGAGATT
GCGGCAATACTTCTGTTGAAACATCATACGACAAAGAGCATTGCAAAGAT
TTAAATAATGCATTTTTGGTGGCAGCTTCAGATTGTTCCCAACCTAAATT
CTCGCCGGTCAACACAGAAACAAAAGCTGTTCCAATCCCTTCAAATGTTC
ACACCTCATCAAATGGTCTTTCTTGTCCACCTATTGCCACAACATCACCT
TGTAGTTATGGGAAAACATTC

Coding sequence (CDS) from alignment at sc0002907:1006..3326+

>TCONS_00041550 ID=TCONS_00041550|Name=TCONS_00041550|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0002907:1006..3326+ (Clytia hemisphaerica)
ATGATTCACAAATNGCAAGCCTTACAAatcaacaagaaaaaaaaatctac
ttcagTATCGCCAATCTGCCACAAAAATACAGCCAACATGACTACCACAA
GCCCTCATGATTCACAAATACTGAAATCGCCAATTGCagatcaaaatttg
ataagTGAAAGAGAAGAATTCGATGATGAAGGAGATTGCGGCAATACTTC
TGTTGAAACATCATACGACAAAGAGCATTGCAAAGATTTAAATAATGCAT
TTTTGGTGGCAGCTTCAGATTGTTCCCAACCTAAATTCTCGCCGGTCAAC
ACAGAAACAAAAGCTGTTCCAATCCCTTCAAATGTTCACACCTCATCAAA
TGGTCTTTCTTGTCCACCTATTGCCACAACATCACCTTGTAGTTATGGGA
AAACATTCATGATTCACAAATNGCAAGCCTTACAAatcaacaagaaaaaa
aaatctacttcagTATCGCCAATCTGCCACAAAAATACAGCCAACATGAC
TACCACAAGCCCTCATGATTCACAAATACTGAAATCGCCAATTGCagatc
aaaatttgataagTGAAAGAGAAGAATTCGATGATGAAGGAGATTGCGGC
AATACTTCTGTTGAAACATCATACGACAAAGAGCATTGCAAAGATTTAAA
TAATGCATTTTTGGTGGCAGCTTCAGATTGTTCCCAACCTAAATTCTCGC
CGGTCAACACAGAAACAAAAGCTGTTCCAATCCCTTCAAATGTTCACACC
TCATCAAATGGTCTTTCTTGTCCACCTATTGCCACAACATCACCTTGTAG
TTATGGGAAAACATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025493XLOC_025493Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041550-proteinTCONS_00041550-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041550-exon-sc0002907-1491911889:1006..1263TCONS_00041550-exon-sc0002907-1491911889:1006..1263Clytia hemisphaericaexon
TCONS_00041550-exon-sc0002907-1510915933:1006..1263TCONS_00041550-exon-sc0002907-1510915933:1006..1263Clytia hemisphaericaexon
TCONS_00041550-exon-sc0002907-1575043694:1006..1263TCONS_00041550-exon-sc0002907-1575043694:1006..1263Clytia hemisphaericaexon
TCONS_00041550-exon-sc0002907-1491911889:3091..3326TCONS_00041550-exon-sc0002907-1491911889:3091..3326Clytia hemisphaericaexon
TCONS_00041550-exon-sc0002907-1510915933:3091..3326TCONS_00041550-exon-sc0002907-1510915933:3091..3326Clytia hemisphaericaexon
TCONS_00041550-exon-sc0002907-1575043694:3091..3326TCONS_00041550-exon-sc0002907-1575043694:3091..3326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002907supercontigsc0002907:1006..3326 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.05611	2.96826	1.8323	1.19679	29.5229	21.3501	11.5079	14.9073	4.82539	7.53624	5.29697	7.26871	4.9674	3.84478	4.36734	9.0139	5.86957	6.5953	3.7052	5.40042	4.69394	4.57908	2.93161	4.88021	17.0698	17.4881	19.8993	18.693	4.05912	3.14437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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