TCONS_00041547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041547
Unique NameTCONS_00041547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041547 ID=TCONS_00041547|Name=TCONS_00041547|organism=Clytia hemisphaerica|type=transcript|length=648bp
ggcaatgCGTGACGAGTTGTGGCAACATTAGATATAGAAAACTCAGTGAT
ACCCCGTGGCTGACTtaagcaaaaataggaacaagcCGATCTTGTGTATC
TTGTGTAAGAAAGAATATGACGTCACAAAGAAACATACATCGAATTTTAT
TGATCGGCAAATAACAGCAGATTTGGAAGTTTATTGCAAGAAAAAAGACG
AAGGATGCGAATGGTCTGGTTTTATCGTTGATTTCGAGGGACATTACAAG
AATGAATGCCAGTTTGCGATTATCCAGTGTGAATTTGATGGATGCGAATT
ATACTTCAAACGAAAGGACAAGACAATCCACGACAAAAATTGTGTTAAAC
GAATTGTACTATGTCCTCATTGAATTATTGTGGAAGGTCgtgtgattttt
ggacctactgggaggtcctttaatttgaccgttgtccgttcgtctgttac
aagcttttctcgggattggctcattagttttttttaattttttgcacaat
gatacaaaatggcaatgcctgaaaagtgacggagcccgatttttgaaaaa
aatttttgggggataaatttgggccaaaaactacctaaaaataaggtttt
ttggacttggggcaaaattgcttcattagtttttcctgatttttgaca
Run BLAST on NCBI

transcript from alignment at sc0002905:6901..8594-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041547 ID=TCONS_00041547|Name=TCONS_00041547|organism=Clytia hemisphaerica|type=transcript|length=1694bp|location=Sequence derived from alignment at sc0002905:6901..8594- (Clytia hemisphaerica)
GGCAATGCGTGACGAGTTGTGGCAACATTAGATATAGAAAACTCAGTGAT
ACCCCGTGGCTGACTTAAGCAAAAATAGGTGCTGTGTATGTGCGGGTGGT
AAGGGTCAGTTTTTTCACCTTTCAAAGTTTCTCTAAGGGTTGCAAAAATC
TGAAAAAATTAGTCTCTCTAAGTGTCGGAAAATTCACGATTATTAGAAAA
TACTTTTGATTAAGAGTGAAAAAATTGTAAAAAAGTCTCTAAGGCTCTTA
TCTAGGGAATTTTTCAAAAATCGAAGAAAATTAAGGGTCACCTTTTCAGC
AAAAGTCAGTTTCTCTAGGGGTCGGTTTTTGGAGGTCCAATCCGCACATA
CCCCTCATCCGCCAACCCTAGTACCCCCTCCGGGGCAAACTCCTCAACTC
ACCAACTAAAAAATTACCTATAATTTTTTCTGAATGGGGCAGTGGCTAGA
GTTTAAGTTTTTCTCCAGAATGAAGGGTTTTAATTTAAGTCCTGGGGTTA
GTACTTGGGCAAAACGGACTACGGAGATCCATGAGTCCCAGGTAGGGTCA
CGATATTACCAAAATTGAAAAATCTTTCCCTTGTAAGAGTACTTTTTGGG
CTGGGGGGGGATTTCGGAGAAAAATTGGGAAATTTTGAAAAATTTTGGAA
TTTCAGTTCCATTCAGGATCACTTTTTTTGGAAATTTTGGCAAAATTGTT
CGTCAGGTAGAGTGGTATGTTGTTTTTTACCAAAAATTCATTTTTTATAG
GAACAAGCCGATCTTGTGTATCTTGTGTAAGAAAGAATATGACGTCACAA
AGGTTTGTCGTTTGGAAGATTTTATCGTGTTTCTTCCTGAAATGGCCTGA
AAATATTTAAATCATTTATTCGACACTCTTCAAAATAAAGTAAATTGCAA
GTTATCAGTTATTTTAACTTATTGTGTACATAATTGGATATTGTGGTGCG
TCCGCTAGAGTTCTGGTCACAACGAATATGTTTTTAGATAAAAAAATACA
GGGGCGATCCTTCCTTCTTCAGAAACATACATCGAATTTTATTGATCGGC
AAATAACAGCAGATTTGGAAGTTTATTGCAAGAAAAAAGACGAAGGATGC
GAATGGTCTGGTTTTATCGTTGATTTCGAGGTACCACGTTTCGGATTTTA
GTGTTTTATTTGACACTGGCCGAGTTTTAAAACCTGTCAAATTTTAAATG
ATCAATATCAATAAGTGTAAAAAGCACCGATAGCGTGAAGTATCATGTAA
AAAGATTATTCAAACCTCTCTTTTTCATATCTAGGGACATTACAAGAATG
AATGCCAGTTTGCGATTATCCAGTGTGAATTTGATGGATGCGAATTATAC
TTCAAACGAAAGGACAAGACAATCCACGACAAAAATTGTGTTAAACGAAT
TGTACTATGTCCTCATTGAATTATTGTGGAAGGTCGTGTGATTTTTGGAC
CTACTGGGAGGTCCTTTAATTTGACCGTTGTCCGTTCGTCTGTTACAAGC
TTTTCTCGGGATTGGCTCATTAGTTTTTTTTAATTTTTTGCACAATGATA
CAAAATGGCAATGCCTGAAAAGTGACGGAGCCCGATTTTTGAAAAAAATT
TTTGGGGGATAAATTTGGGCCAAAAACTACCTAAAAATAAGGTTTTTTGG
ACTTGGGGCAAAATTGCTTCATTAGTTTTTCCTGATTTTTGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025491XLOC_025491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041547-exon-sc0002905-1575043694:8517..8594TCONS_00041547-exon-sc0002905-1575043694:8517..8594Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1575043694:7793..7844TCONS_00041547-exon-sc0002905-1575043694:7793..7844Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1575043694:7465..7572TCONS_00041547-exon-sc0002905-1575043694:7465..7572Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1575043694:6901..7310TCONS_00041547-exon-sc0002905-1575043694:6901..7310Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1510915933:8517..8594TCONS_00041547-exon-sc0002905-1510915933:8517..8594Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1510915933:7793..7844TCONS_00041547-exon-sc0002905-1510915933:7793..7844Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1510915933:7465..7572TCONS_00041547-exon-sc0002905-1510915933:7465..7572Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1510915933:6901..7310TCONS_00041547-exon-sc0002905-1510915933:6901..7310Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1491911889:8517..8594TCONS_00041547-exon-sc0002905-1491911889:8517..8594Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1491911889:7793..7844TCONS_00041547-exon-sc0002905-1491911889:7793..7844Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1491911889:7465..7572TCONS_00041547-exon-sc0002905-1491911889:7465..7572Clytia hemisphaericaexon
TCONS_00041547-exon-sc0002905-1491911889:6901..7310TCONS_00041547-exon-sc0002905-1491911889:6901..7310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002905supercontigsc0002905:6901..8594 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	4.75541	2.16525	0	5.03622e-07	8.73143	0.0125097	16.1568	2.60555	0.970677	0	2.80785	0.379064	0	0.22163	0.195577	0	0.462429	0.794593	0.831204	0	0	2.43662	0.796646	0.374054	2.46153	0.133708	0	1.51807	0.752342
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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