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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041534 ID=TCONS_00041534|Name=TCONS_00041534|organism=Clytia hemisphaerica|type=transcript|length=951bp
GGGgcttgaagatttttgataaccttgaaaacattttttttatccaattg
acttgagatttttcaagtgtgcaccaaatatgaattggcatctttgttga
aaatttcgcCATCATTCTGAAATATAAATAGGAATATCTAGGAATAAAAA
AAGCTATTGACTTGAgctattgaaattttgaccagtttgACAAATGCTAG
GtattaaatttcaagataatCAAATTAGGTATTAAATTTGGGCATAATTA
GACAAGCTGTTACTGTAAAGTGAGTCTGCATGTTGTCTCAGACTAATATC
TATCAATTGTGAAACTTAACACTTTTTCATGTTTCTTTTCTCGAAAAATT
TATCTTGtaaatgtaaatattttctttcagttttatttATGTTCAGAAAT
ATGGCTGCAGAAACACTGAAGAATTATCGCAAATTGGACATTTTTGCCAA
GCATAAAATCCCCCCAACACTGCTTAATGAAGTAGTTGAATCTGCTAAAG
ACTGGGCAATATCTCATGGATTGGTAATGAAGTTTAAGGAGAATCCTGCA
TTGTCGAAACATGctccttttgttttgtttccttCACCCTTCCCAACATA
CCTCTATAATGAAGCCTTCCAAGTGCAAAAGGATTTTCAAACATTATTTC
ACAGAGCAAGTTTAGATCACGAGTTTATAAAGGATTCTCTTAAAAGCGTT
ATCATTCATGACGAGTTCACGAAACTTCAGTATGATCTTTATGTGAAAGT
TCGACAAGAAGGAATCAAGCCTAAAATCTACTTTGACATTGCTCGTTCAG
ATTACATGATTGACCAAGTAAAAACAGAATACGATTCAAGTAAACCACTC
ACTGAAGAAAGACCATATGAAATCAAACAGATTGAAATGAACATGATCGC
TGCATCTTTTTCAGGACTTTCGTCATCTATGCCTTCTCTACACAGGTATG
T Run BLAST on NCBI protein sequence of TCONS_00041534-protein >TCONS_00041534-protein ID=TCONS_00041534-protein|Name=TCONS_00041534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MFLFSKNLSCKCKYFLSVLFMFRNMAAETLKNYRKLDIFAKHKIPPTLLN
EVVESAKDWAISHGLVMKFKENPALSKHAPFVLFPSPFPTYLYNEAFQVQ
KDFQTLFHRASLDHEFIKDSLKSVIIHDEFTKLQYDLYVKVRQEGIKPKI
YFDIARSDYMIDQVKTEYDSSKPLTEERPYEIKQIEMNMIAASFSGLSSS
MPSLHRY Run BLAST on NCBI transcript from alignment at sc0002902:4081..6323- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041534 ID=TCONS_00041534|Name=TCONS_00041534|organism=Clytia hemisphaerica|type=transcript|length=2243bp|location=Sequence derived from alignment at sc0002902:4081..6323- (Clytia hemisphaerica)
GGGGCTTGAAGATTTTTGATAACCTTGAAAACATTTTTTTTATCCAATTG
ACTTGAGATTTTTCAAGTGTGCACCAAATATGAATTGGCATCTTTGTTGA
AAATTTCGCCATCATTCTGAAATATAAATAGGAATATCTAGGAATAAAAA
AAGCTATTGACTTGAGCTATTGAAATTTTGACCAGTTTGACAAATGCTAG
GTATTAAATTTCAAGATAATCAAATTAGGTATTAAATTTGGGCATAATTA
GACAAGCTGTTACTGTAAAGTGAGTCTGCATGTTGTCTCAGACTAATATC
TATCAATTGTGAAACTTAACACTTTTTCATGTTTCTTTTCTCGAAAAATT
TATCTTGTAAATGTAAATATTTTCTTTCAGTTTTATTTATGTTCAGAAAT
ATGGCTGCAGAAACACTGAAGAATGTAAGTTATTTTTCAGATACACAGAA
AATCTGATAAAAGATGATAAATGTAGAAGTTTTGCTTTTTGTAAATGACA
TTTCAATATAAAAGAAGTATGGATGGAATTAGACACCCCCTTGTCACAGA
ACCAGTAGGATTTTTCAGCCAGTGGGGTGAAAATAAAGGACTGAAACTTG
ATGGGTATTGATACTCCCATGTTTTTTTATGGCTTGGGATTTAAATTCCA
GTGTTTTCAAGTCAGAAAATGGGGATTGGAAAAATAGCATAATATTTTGC
AAAAAGGATTGGTTTATTTGATTATCTTCAGTGGGAACAAAAATTAAATT
TTTCTAGTGGGAAGGGGTCCCAGCGGGTTTGTGAGAAGGGAGTGTAATTA
GGTAATATTAAGGATAGAATAATTATCTTTTAAAATAGCTCTTCCTGTTA
TCTCGAATATTATAAATTATTAAAAAAGGTTATGAACAAGTAGTCCCAGT
TGCATGGAAAGAGTAAGACAAGTTGTAAATCTTTATCTTTAGTATCGCAA
ATTGGACATTTTTGCCAAGCATAAAATCCCCCCAACACTGCTTAATGAAG
TAGTTGAATCTGCTAAAGACTGGGCAATATCTCATGGATTGGTAATGAAG
TTTAAGGAGAATCCTGCATTGTCGAAACATGCTCCTTTTGTTTTGTTTCC
TTCACCCTTCCCAACATACCTCTATAATGAAGCCTTCCAAGTGCAAAAGG
ATTTTCAAACATTATTTCACAGAGCAAGTTTAGATCACGAGTTTATAAAG
GATTCTCTTAAAAGGTATATTTCAATTATGGCTTTCTATAAAATATGAAG
TAACTTTCAGTACGTTTTAATGCATAATAATGGCTTAATAATTTTATATC
AACAGCAAAACCTTGTTGAAAGAACCTTTTAAATTAAGCTATATATACAG
TGAATATTATTTTAAGACCAAAAAGATATCAGTCTCTTAATTTTTATTTT
CATATTTTCTCAGCGTTATCATTCATGACGAGTTCACGAAACTTCAGTAT
GATCTTTATGTGAAAGTTCGACAAGAAGGAATCAAGCCTGTAAGTCAAAA
TCTTCCTTAAATTGAAATTCTTTCAAATTCGTGGAAAGTAGTAGTAAGTG
AGTCTGCGACCGCAGTCGGAGGCAACCTGAAGACTCCTCTTTCGATAGCT
ATCTACCCGATGATAGGGGAGGGCACCACTCTTTCTCTCTGGATTGCTCC
ACTTACCCTTGATCCTTCCCTTAATTGCTGAGCATCAAGCAGAGAGGCTT
CAAGTACCATTTTGGGAATCTTTGAAATGATCCGACTGGGGGTTGAGCCC
ACAACCTTGCGAACCGTAGCTGGATGCTCTACCACTGCACTACGGTTGCT
GGATTAGTGGAAACATATGGCTGTTGGGTCTTTGGGTCTATATAATTTAA
TGTTAAAAGACATTACAATGGTGCATCTCATGAATAGATTATGTTGCATA
ATAGTTTTCTCGGGAAGCTTTTTGGTTTGAGAAATAGTCAAGCAACCTTT
TATTGGTACAATAGTCAGAGAATATAATTCTTCAGAGCTACATTGAACCT
ATAGTTGTATTAGTTATGAATGATAAACTTAAATGCTTGATTCCTTTCTA
TTATTACTTTTCAGAAAATCTACTTTGACATTGCTCGTTCAGATTACATG
ATTGACCAAGTAAAAACAGAATACGATTCAAGTAAACCACTCACTGAAGA
AAGACCATATGAAATCAAACAGATTGAAATGAACATGATCGCTGCATCTT
TTTCAGGACTTTCGTCATCTATGCCTTCTCTACACAGGTATGT Coding sequence (CDS) from alignment at sc0002902:4081..6323- >TCONS_00041534 ID=TCONS_00041534|Name=TCONS_00041534|organism=Clytia hemisphaerica|type=CDS|length=2484bp|location=Sequence derived from alignment at sc0002902:4081..6323- (Clytia hemisphaerica)
AAAATCTACTTTGACATTGCTCGTTCAGATTACATGATTGACCAAGTAAA
AACAGAATACGATTCAAGTAAACCACTCACTGAAGAAAGACCATATGAAA
TCAAACAGATTGAAATGAACATGATCGCTGCATCTTTTTCAGGACTTTCG
TCATCTATGCCTTCTCTACACAGGTATCGTTATCATTCATGACGAGTTCA
CGAAACTTCAGTATGATCTTTATGTGAAAGTTCGACAAGAAGGAATCAAG
CCTTATCGCAAATTGGACATTTTTGCCAAGCATAAAATCCCCCCAACACT
GCTTAATGAAGTAGTTGAATCTGCTAAAGACTGGGCAATATCTCATGGAT
TGGTAATGAAGTTTAAGGAGAATCCTGCATTGTCGAAACATGCTCCTTTT
GTTTTGTTTCCTTCACCCTTCCCAACATACCTCTATAATGAAGCCTTCCA
AGTGCAAAAGGATTTTCAAACATTATTTCACAGAGCAAGTTTAGATCACG
AGTTTATAAAGGATTCTCTTAAAAGATGTTTCTTTTCTCGAAAAATTTAT
CTTGTAAATGTAAATATTTTCTTTCAGTTTTATTTATGTTCAGAAATATG
GCTGCAGAAACACTGAAGAATAAAATCTACTTTGACATTGCTCGTTCAGA
TTACATGATTGACCAAGTAAAAACAGAATACGATTCAAGTAAACCACTCA
CTGAAGAAAGACCATATGAAATCAAACAGATTGAAATGAACATGATCGCT
GCATCTTTTTCAGGACTTTCGTCATCTATGCCTTCTCTACACAGGTATCG
TTATCATTCATGACGAGTTCACGAAACTTCAGTATGATCTTTATGTGAAA
GTTCGACAAGAAGGAATCAAGCCTTATCGCAAATTGGACATTTTTGCCAA
GCATAAAATCCCCCCAACACTGCTTAATGAAGTAGTTGAATCTGCTAAAG
ACTGGGCAATATCTCATGGATTGGTAATGAAGTTTAAGGAGAATCCTGCA
TTGTCGAAACATGCTCCTTTTGTTTTGTTTCCTTCACCCTTCCCAACATA
CCTCTATAATGAAGCCTTCCAAGTGCAAAAGGATTTTCAAACATTATTTC
ACAGAGCAAGTTTAGATCACGAGTTTATAAAGGATTCTCTTAAAAGATGT
TTCTTTTCTCGAAAAATTTATCTTGTAAATGTAAATATTTTCTTTCAGTT
TTATTTATGTTCAGAAATATGGCTGCAGAAACACTGAAGAATAAAATCTA
CTTTGACATTGCTCGTTCAGATTACATGATTGACCAAGTAAAAACAGAAT
ACGATTCAAGTAAACCACTCACTGAAGAAAGACCATATGAAATCAAACAG
ATTGAAATGAACATGATCGCTGCATCTTTTTCAGGACTTTCGTCATCTAT
GCCTTCTCTACACAGGTATCGTTATCATTCATGACGAGTTCACGAAACTT
CAGTATGATCTTTATGTGAAAGTTCGACAAGAAGGAATCAAGCCTTATCG
CAAATTGGACATTTTTGCCAAGCATAAAATCCCCCCAACACTGCTTAATG
AAGTAGTTGAATCTGCTAAAGACTGGGCAATATCTCATGGATTGGTAATG
AAGTTTAAGGAGAATCCTGCATTGTCGAAACATGCTCCTTTTGTTTTGTT
TCCTTCACCCTTCCCAACATACCTCTATAATGAAGCCTTCCAAGTGCAAA
AGGATTTTCAAACATTATTTCACAGAGCAAGTTTAGATCACGAGTTTATA
AAGGATTCTCTTAAAAGATGTTTCTTTTCTCGAAAAATTTATCTTGTAAA
TGTAAATATTTTCTTTCAGTTTTATTTATGTTCAGAAATATGGCTGCAGA
AACACTGAAGAATAAAATCTACTTTGACATTGCTCGTTCAGATTACATGA
TTGACCAAGTAAAAACAGAATACGATTCAAGTAAACCACTCACTGAAGAA
AGACCATATGAAATCAAACAGATTGAAATGAACATGATCGCTGCATCTTT
TTCAGGACTTTCGTCATCTATGCCTTCTCTACACAGGTATCGTTATCATT
CATGACGAGTTCACGAAACTTCAGTATGATCTTTATGTGAAAGTTCGACA
AGAAGGAATCAAGCCTTATCGCAAATTGGACATTTTTGCCAAGCATAAAA
TCCCCCCAACACTGCTTAATGAAGTAGTTGAATCTGCTAAAGACTGGGCA
ATATCTCATGGATTGGTAATGAAGTTTAAGGAGAATCCTGCATTGTCGAA
ACATGCTCCTTTTGTTTTGTTTCCTTCACCCTTCCCAACATACCTCTATA
ATGAAGCCTTCCAAGTGCAAAAGGATTTTCAAACATTATTTCACAGAGCA
AGTTTAGATCACGAGTTTATAAAGGATTCTCTTAAAAGATGTTTCTTTTC
TCGAAAAATTTATCTTGTAAATGTAAATATTTTCTTTCAGTTTTATTTAT
GTTCAGAAATATGGCTGCAGAAACACTGAAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041534-exon-sc0002902-1575043694:5900..6323 | TCONS_00041534-exon-sc0002902-1575043694:5900..6323 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1575043694:5110..5381 | TCONS_00041534-exon-sc0002902-1575043694:5110..5381 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1575043694:4835..4910 | TCONS_00041534-exon-sc0002902-1575043694:4835..4910 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1575043694:4081..4259 | TCONS_00041534-exon-sc0002902-1575043694:4081..4259 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1510915933:5900..6323 | TCONS_00041534-exon-sc0002902-1510915933:5900..6323 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1510915933:5110..5381 | TCONS_00041534-exon-sc0002902-1510915933:5110..5381 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1510915933:4835..4910 | TCONS_00041534-exon-sc0002902-1510915933:4835..4910 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1510915933:4081..4259 | TCONS_00041534-exon-sc0002902-1510915933:4081..4259 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1491911889:5900..6323 | TCONS_00041534-exon-sc0002902-1491911889:5900..6323 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1491911889:5110..5381 | TCONS_00041534-exon-sc0002902-1491911889:5110..5381 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1491911889:4835..4910 | TCONS_00041534-exon-sc0002902-1491911889:4835..4910 | Clytia hemisphaerica | exon |
| TCONS_00041534-exon-sc0002902-1491911889:4081..4259 | TCONS_00041534-exon-sc0002902-1491911889:4081..4259 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002902 | supercontig | sc0002902:4081..6323 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014042 | Glutathione_synthase_a-hlx_euk |
| IPR014049 | Glutathione_synthase_N_euk |
| IPR005615 | Glutathione_synthase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004363 | glutathione synthase activity |
| GO:0005524 | ATP binding |
| GO:0016874 | ligase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006750 | glutathione biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006750 |
glutathione biosynthetic process |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004363 |
glutathione synthase activity |
| molecular_function |
GO:0016874 |
ligase activity |
Blast
BLAST of TCONS_00041534 vs. Swiss-Prot (Human)
Match: GSHB (Glutathione synthetase OS=Homo sapiens GN=GSS PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.870e-20 Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query: 473 LNEVVESAKDWAISHGLVMKFKENPALSK---HAPFVLFPSPFPTYLYNEAFQVQKDFQTLFHRASLDHEFIKDSLKSVIIHDEFTKLQYDLYVKVRQEGIKPKIYFDIARSDYMIDQVKTEYDSSKPLTEERPYEIKQIEMNMIAAXXXXXXXXXXXLHRY 949
L E+ A D A++ G++++ + P S+ +APF LFPS P+ L +A+ VQ DF L S + F++ +L S I D+FT +D++ +V +EGI ++ + RSDYM + D S L KQIE+N I+ASF GL+S P++HR+
Sbjct: 15 LEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQNAAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQR---SADGSPAL--------KQIEINTISASFGGLASRTPAVHRH 165
The following BLAST results are available for this feature:
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