|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041532 ID=TCONS_00041532|Name=TCONS_00041532|organism=Clytia hemisphaerica|type=transcript|length=1353bp
TAATTGTTATGTAATTTCACCTCGGAAAAGAGAAACATTCCGTAAATTAT
CAAGATAACAATTTTTGCCGATTCAGCgattcgatttctcaaattaaaAT
GGCGGCCGAACGCAAGAAAAGTAAATCAGAGCCAAAAGAACAAGGGAAGA
AACGTAACGTGCTCACAGCAATATTATTGATTTACTTGAAAAGAAATGAA
TCCTGCTTTCGAAAAACATATATTTAAATATGTGGTGTCAAATTTGGAGA
AGAATGTTAGAAAGAAGCTCAAAAACTCAAACACTGCGAAATCAAATATT
GCAAATCCTCACACAAGACAAGGACAGTACAAATCAATAGTGCAAGTCAA
CATGCATTCGCTTTTCGTTATGCTTCGAAATTTGGTGGTGAAGAAGTCAA
CACAGCTATGAAAAGTAAATCCTCTACAGCTTTATTTAACATCAAAACAC
TTGTGAAAGCATCAGAAACACTTGAAACCTCTGCCATTGCTAAGTTCAAT
TCCTCTGGTGATGCGATTTTAATTACTCCATGGCGTTATCTTGCCAAAGA
TACAGAACTACATTTTAAAGATGGAAAACATTGTCAATTTGAAAAAGGAA
AACTTGCGATCCCAATAAAGGAAACAGAAGAATATGTAGATTTGTTTTTT
GTATGTCCAGGGCTTGATGGTAACGATAATGTACCGTGTTGGGCTAGAGA
CATAAATTTGGAAGAGATTGGACTTAAGCTCCATCCTTCTGAGTTTCCCG
AGGAAAAGGGAACAGGAACAGTAACATTAAAGAGATGCGACCTGGAATGT
GCTTTTATACCTAATTCAGAGGAGATTAGTGATGGTGATTTTATCAAAGT
TAGATCGAACTATTACCAAATCCGTGGCTTTTGTAGGCACAATCAAAACT
TAAATTCTGTGAGGTTCACAAGTGACATCATTAAAAATGCTAACAAAGCA
CCATATGCAATTATTCGACAACCAATTTTAAGGGGTAATATTGCCCGATT
ACCAAAATGTGCTGTGGTTGAAGAGCAAAACATAACTCTGGTAGTGTCGG
ATATTGATCGTGATAATTTTCATGGAACTCTGAACATTACATTTCGAAAT
GCCTGCTTCAATAAACTAGGCTTTCTTACACATGACACTGCTATTATGGT
GCCTTGATGGTGGTactttttgtcaatatttttcatttttatcttagata
atatattattttgactcatcaatttgtttttcttttgaagcATTTTACTT
TAATTTCTATAACAATGATGATTGCTTAAATATAACTTTTCTTTGATTGC
CTTTGAAGTATTTAAGTTTTAAGAATTAGATTTATTGgttaaaaagtatt
ttt Run BLAST on NCBI protein sequence of TCONS_00041532-protein >TCONS_00041532-protein ID=TCONS_00041532-protein|Name=TCONS_00041532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MKSKSSTALFNIKTLVKASETLETSAIAKFNSSGDAILITPWRYLAKDTE
LHFKDGKHCQFEKGKLAIPIKETEEYVDLFFVCPGLDGNDNVPCWARDIN
LEEIGLKLHPSEFPEEKGTGTVTLKRCDLECAFIPNSEEISDGDFIKVRS
NYYQIRGFCRHNQNLNSVRFTSDIIKNANKAPYAIIRQPILRGNIARLPK
CAVVEEQNITLVVSDIDRDNFHGTLNITFRNACFNKLGFLTHDTAIMVP Run BLAST on NCBI transcript from alignment at sc0002901:1211..2563 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041532 ID=TCONS_00041532|Name=TCONS_00041532|organism=Clytia hemisphaerica|type=transcript|length=1353bp|location=Sequence derived from alignment at sc0002901:1211..2563 (Clytia hemisphaerica)
aaaaatactttttaacCAATAAATCTAATTCTTAAAACTTAAATACTTCA
AAGGCAATCAAAGAAAAGTTATATTTAAGCAATCATCATTGTTATAGAAA
TTAAAGTAAAATgcttcaaaagaaaaacaaattgatgagtcaaaataata
tattatctaagataaaaatgaaaaatattgacaaaaagtACCACCATCAA
GGCACCATAATAGCAGTGTCATGTGTAAGAAAGCCTAGTTTATTGAAGCA
GGCATTTCGAAATGTAATGTTCAGAGTTCCATGAAAATTATCACGATCAA
TATCCGACACTACCAGAGTTATGTTTTGCTCTTCAACCACAGCACATTTT
GGTAATCGGGCAATATTACCCCTTAAAATTGGTTGTCGAATAATTGCATA
TGGTGCTTTGTTAGCATTTTTAATGATGTCACTTGTGAACCTCACAGAAT
TTAAGTTTTGATTGTGCCTACAAAAGCCACGGATTTGGTAATAGTTCGAT
CTAACTTTGATAAAATCACCATCACTAATCTCCTCTGAATTAGGTATAAA
AGCACATTCCAGGTCGCATCTCTTTAATGTTACTGTTCCTGTTCCCTTTT
CCTCGGGAAACTCAGAAGGATGGAGCTTAAGTCCAATCTCTTCCAAATTT
ATGTCTCTAGCCCAACACGGTACATTATCGTTACCATCAAGCCCTGGACA
TACAAAAAACAAATCTACATATTCTTCTGTTTCCTTTATTGGGATCGCAA
GTTTTCCTTTTTCAAATTGACAATGTTTTCCATCTTTAAAATGTAGTTCT
GTATCTTTGGCAAGATAACGCCATGGAGTAATTAAAATCGCATCACCAGA
GGAATTGAACTTAGCAATGGCAGAGGTTTCAAGTGTTTCTGATGCTTTCA
CAAGTGTTTTGATGTTAAATAAAGCTGTAGAGGATTTACTTTTCATAGCT
GTGTTGACTTCTTCACCACCAAATTTCGAAGCATAACGAAAAGCGAATGC
ATGTTGACTTGCACTATTGATTTGTACTGTCCTTGTCTTGTGTGAGGATT
TGCAATATTTGATTTCGCAGTGTTTGAGTTTTTGAGCTTCTTTCTAACAT
TCTTCTCCAAATTTGACACCACATATTTAAATATATGTTTTTCGAAAGCA
GGATTCATTTCTTTTCAAGTAAATCAATAATATTGCTGTGAGCACGTTAC
GTTTCTTCCCTTGTTCTTTTGGCTCTGATTTACTTTTCTTGCGTTCGGCC
GCCATtttaatttgagaaatcgaatcGCTGAATCGGCAAAAATTGTTATC
TTGATAATTTACGGAATGTTTCTCTTTTCCGAGGTGAAATTACATAACAA
TTA Coding sequence (CDS) from alignment at sc0002901:1211..2563 >TCONS_00041532 ID=TCONS_00041532|Name=TCONS_00041532|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0002901:1211..2563 (Clytia hemisphaerica)
TCAAGGCACCATAATAGCAGTGTCATGTGTAAGAAAGCCTAGTTTATTGA
AGCAGGCATTTCGAAATGTAATGTTCAGAGTTCCATGAAAATTATCACGA
TCAATATCCGACACTACCAGAGTTATGTTTTGCTCTTCAACCACAGCACA
TTTTGGTAATCGGGCAATATTACCCCTTAAAATTGGTTGTCGAATAATTG
CATATGGTGCTTTGTTAGCATTTTTAATGATGTCACTTGTGAACCTCACA
GAATTTAAGTTTTGATTGTGCCTACAAAAGCCACGGATTTGGTAATAGTT
CGATCTAACTTTGATAAAATCACCATCACTAATCTCCTCTGAATTAGGTA
TAAAAGCACATTCCAGGTCGCATCTCTTTAATGTTACTGTTCCTGTTCCC
TTTTCCTCGGGAAACTCAGAAGGATGGAGCTTAAGTCCAATCTCTTCCAA
ATTTATGTCTCTAGCCCAACACGGTACATTATCGTTACCATCAAGCCCTG
GACATACAAAAAACAAATCTACATATTCTTCTGTTTCCTTTATTGGGATC
GCAAGTTTTCCTTTTTCAAATTGACAATGTTTTCCATCTTTAAAATGTAG
TTCTGTATCTTTGGCAAGATAACGCCATGGAGTAATTAAAATCGCATCAC
CAGAGGAATTGAACTTAGCAATGGCAGAGGTTTCAAGTGTTTCTGATGCT
TTCACAAGTGTTTTGATGTTAAATAAAGCTGTAGAGGATTTACTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041532-exon-sc0002901-1491911889:1211..2563 | TCONS_00041532-exon-sc0002901-1491911889:1211..2563 | Clytia hemisphaerica | exon |
| TCONS_00041532-exon-sc0002901-1510915933:1211..2563 | TCONS_00041532-exon-sc0002901-1510915933:1211..2563 | Clytia hemisphaerica | exon |
| TCONS_00041532-exon-sc0002901-1575043694:1211..2563 | TCONS_00041532-exon-sc0002901-1575043694:1211..2563 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002901 | supercontig | sc0002901:1211..2563 . |
Blast
The following BLAST results are available for this feature:
|
