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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041530 ID=TCONS_00041530|Name=TCONS_00041530|organism=Clytia hemisphaerica|type=transcript|length=1381bp
AGAAACCATCAGGAACTGTAACAAGAATGTTATTAGTGAATCATAAAATG
AAGATTTGTATATAAAATTTGATTAGAATTTGtcgattaaaatttttttt
tgtagtattttatttatttggttCAATGATCTGGTATCAGAGAACTTTAG
GACgttttaatatttaatatttgattGTAAATTGATATAGAATTTTTCCA
CTTACGTTCGATGTTGTCTTCCTTATTATAGGATTTCCGAGGTGGCAACC
CATCCCAAGGAAGCACTGGCCAAAATGATGGCGGCCGCGACCCACGATCG
ATGGGTTATCTCTTCGGTGAATAATAACTGCCGGGGAGTTCGTTTCCTCT
TGATGGTAGGAAACGACAGCGCAACGAAAAAAAAgtagaacattttgaaa
aacgtgattgataaattataaaatcaaGTCCAAACGAACGATTAAAAAAC
TCAGGAAGCAAATGAANAAGATAGCGCCCTGTATCGAACTGCAAAGGGAT
ATAATAAACACAAAACCCCAACTTATTCTTTCGTATTTTGGAAGGATGCA
CAGTGAGATTATCTTGACAAGACTTAAAAGAAGATCACCCAAAGAAGCAA
GCAATATCAGGGAAGAAGACCGCCGACTAGATATCTTAATACGGTTGACA
ACAGAAGAATACAGAGCTGATTATCTTCGACGAATGGGAttgaggaaaga
aaaattcGGAGCGTTTACGGTGTGGAGATATGAGAAACCGCCTCCACCAC
TGCAACGAGGAGCTCCCGTTCATGAGCAATGACCGGAAGTATTGCAAACA
AAGGAAAACTTACCGAGCTACTCAATCACTTCGGCTGAATCCGACAAGNT
CAAAATCATCACAATCCGACAATTGAAATGGTGAATTTAACGGTAGTGCA
CTACgtatcaaaaataacttttgaattcaaaattaaagaattgATAATTG
GAATACACATTCAGCATAATGAAGAATGAAATGCTGTTTATATGAAGCAA
ACAGCTGAAATTATAACCTGGATCCAGAGACTATTTTCGAAGAAATCACG
TTCGGCCGGCTTAAGGGCGTGATTTCCGATTGAAACATGCATATGGTAGA
TATGAATTATAGTATTATGAATTGTTTAAACTGCAGTATTATGAATGAAT
TATTATGAATTACCGAACTATGAAAAGCTTATGAATTTTTACAATGCGCA
TTGGAAGAAATAATAAAGAGACTGAAAAACTATCTTACGTTGGTAGATCA
CTATCaacaaattgacaaaattttttaaagtgaCGAGGACGTCACTTGTC
GAACGTCGGAGATGTGAggttgatgatgatgaatagTAAACGATAATGAA
TAATGCAAAGGAGGTTGGGACTGAGCCAANN Run BLAST on NCBI protein sequence of TCONS_00041530-protein >TCONS_00041530-protein ID=TCONS_00041530-protein|Name=TCONS_00041530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MXKIAPCIELQRDIINTKPQLILSYFGRMHSEIILTRLKRRSPKEASNIR
EEDRRLDILIRLTTEEYRADYLRRMGLRKEKFGAFTVWRYEKPPPPLQRG
APVHEQ Run BLAST on NCBI transcript from alignment at sc0002900:12942..14322 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041530 ID=TCONS_00041530|Name=TCONS_00041530|organism=Clytia hemisphaerica|type=transcript|length=1381bp|location=Sequence derived from alignment at sc0002900:12942..14322 (Clytia hemisphaerica)
NNTTGGCTCAGTCCCAACCTCCTTTGCATTATTCATTATCGTTTActatt
catcatcatcaaccTCACATCTCCGACGTTCGACAAGTGACGTCCTCGtc
actttaaaaaattttgtcaatttgttGATAGTGATCTACCAACGTAAGAT
AGTTTTTCAGTCTCTTTATTATTTCTTCCAATGCGCATTGTAAAAATTCA
TAAGCTTTTCATAGTTCGGTAATTCATAATAATTCATTCATAATACTGCA
GTTTAAACAATTCATAATACTATAATTCATATCTACCATATGCATGTTTC
AATCGGAAATCACGCCCTTAAGCCGGCCGAACGTGATTTCTTCGAAAATA
GTCTCTGGATCCAGGTTATAATTTCAGCTGTTTGCTTCATATAAACAGCA
TTTCATTCTTCATTATGCTGAATGTGTATTCCAATTATcaattctttaat
tttgaattcaaaagttatttttgatacGTAGTGCACTACCGTTAAATTCA
CCATTTCAATTGTCGGATTGTGATGATTTTGANCTTGTCGGATTCAGCCG
AAGTGATTGAGTAGCTCGGTAAGTTTTCCTTTGTTTGCAATACTTCCGGT
CATTGCTCATGAACGGGAGCTCCTCGTTGCAGTGGTGGAGGCGGTTTCTC
ATATCTCCACACCGTAAACGCTCCgaatttttctttcctcaaTCCCATTC
GTCGAAGATAATCAGCTCTGTATTCTTCTGTTGTCAACCGTATTAAGATA
TCTAGTCGGCGGTCTTCTTCCCTGATATTGCTTGCTTCTTTGGGTGATCT
TCTTTTAAGTCTTGTCAAGATAATCTCACTGTGCATCCTTCCAAAATACG
AAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGATA
CAGGGCGCTATCTTNTTCATTTGCTTCCTGAGTTTTTTAATCGTTCGTTT
GGACttgattttataatttatcaatcacgtttttcaaaatgttctacTTT
TTTTTCGTTGCGCTGTCGTTTCCTACCATCAAGAGGAAACGAACTCCCCG
GCAGTTATTATTCACCGAAGAGATAACCCATCGATCGTGGGTCGCGGCCG
CCATCATTTTGGCCAGTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATC
CTATAATAAGGAAGACAACATCGAACGTAAGTGGAAAAATTCTATATCAA
TTTACaatcaaatattaaatattaaaacGTCCTAAAGTTCTCTGATACCA
GATCATTGaaccaaataaataaaatactacaaaaaaaaattttaatcgaC
AAATTCTAATCAAATTTTATATACAAATCTTCATTTTATGATTCACTAAT
AACATTCTTGTTACAGTTCCTGATGGTTTCT Coding sequence (CDS) from alignment at sc0002900:12942..14322 >TCONS_00041530 ID=TCONS_00041530|Name=TCONS_00041530|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0002900:12942..14322 (Clytia hemisphaerica)
TCATTGCTCATGAACGGGAGCTCCTCGTTGCAGTGGTGGAGGCGGTTTCT
CATATCTCCACACCGTAAACGCTCCgaatttttctttcctcaaTCCCATT
CGTCGAAGATAATCAGCTCTGTATTCTTCTGTTGTCAACCGTATTAAGAT
ATCTAGTCGGCGGTCTTCTTCCCTGATATTGCTTGCTTCTTTGGGTGATC
TTCTTTTAAGTCTTGTCAAGATAATCTCACTGTGCATCCTTCCAAAATAC
GAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGAT
ACAGGGCGCTATCTTNTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041530-exon-sc0002900-1491911889:12942..14322 | TCONS_00041530-exon-sc0002900-1491911889:12942..14322 | Clytia hemisphaerica | exon |
| TCONS_00041530-exon-sc0002900-1510915933:12942..14322 | TCONS_00041530-exon-sc0002900-1510915933:12942..14322 | Clytia hemisphaerica | exon |
| TCONS_00041530-exon-sc0002900-1575043694:12942..14322 | TCONS_00041530-exon-sc0002900-1575043694:12942..14322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002900 | supercontig | sc0002900:12942..14322 . |
Blast
The following BLAST results are available for this feature:
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