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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041523 ID=TCONS_00041523|Name=TCONS_00041523|organism=Clytia hemisphaerica|type=transcript|length=1519bp
CGATTCAATTTTTGGACAACCGGGTTATAATGATATGTGTGCGTCGGGAT
GCGTTGTAATTTCATAATGATTTCATATAGCGCGTCGGCGTTATTGCATC
AGCCGTTATCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTACTGTGGa
caattttctgaaatatttgagtaaattcgCAGTAGTAGCTGGCTAAGTTG
TTTCACAAACGTGATGGTTGAATGGCTGGAAGAAGAGTTCAAACAGTCTC
AActttcatcatttcattgaggtgagagtttttgatttatatcaaagttt
attgattccttttcaaagttattttcaaagaagataGCAGCAAGTGTACA
CTGGTACATTTACCTCACTTGCAAGTTATCAAAAAGATAGCATTAAGCTT
GTCTGTGTTATATATCAGACAAGCAGCTACACCCTGAGGTTGCATGCGAG
CTCCTTGCATCCTCTTACTTATCATACTTAACTTGCTAAACTTGCTAAAC
CTACTGAACCAATTGTCACACTTGTCAAACTTGAATAACCTGCAAAATCT
ACCAAACGTTCAAAACGTGCAAAACCTGCCAACTGTTCGAAACTTGCGAA
ACCCACCAAACGCAAACGTTTACTTCACACATCCTAATCTCAGCTTACAT
ATCTCAGCATCTCAGCTTACACGTCGCATCGTCCGATCTACTTAGCCCTA
TTAACTTATACTCCctgcaaaacaaaaacaaaactcttATTTCTGAagtc
aaatttgaaaaacatgTTGAGTACGCAAACTTATCATATTTCAAAAGCTA
TTTTAGGCTCATTTAATCAAGCGAACGAGGAATTATTTGGCGAAACAGCT
GGAACTCAATGCAGCGTTAACTGCCTGTATGCTATTTTTTGGTCTAATTT
TCGACGCGTTAATCTTTGGAAGACTACAGACCTTGACAGAATCTTAATTG
AAGGAGATAAATTATACAAACAGCTTGATACAAACTCCCATCTTTCTGTT
GATGAGATGCCGCGTTTCATTGAAATAAACGGTGTCATaactaatttcaa
ttttttgaattttgcaaaTGGTGAAGCGAACCTAAATAATGATGATCCTT
TCCTTCAAATCCCTCTGAGTGAATCTGAAAGTCTAGAATTCAACGCCTTA
ATGATCATTAATGGTTTTACTATCACAATTATGAGTCGGCCTCAGGGCTA
CTTTATCTTTGACTCGCATAGTCGAAATGAACTCGGATTGCTTGATCCCT
CAAATGGAAAATCATGGGTGCATACCATTtagccaaaaacccaaaaaagt
gaaacagaggGTTTAACGAACCAACACATTATCACACATAATTCTACAGA
ATACGTAGATGgtgtaaatttaaaatttctacagATGTCTGTAGATTTAC
GGGTAGAATTattattctacaaaatatgtaGATTTATATTTCTACAGACA
TCTGTAATACCGGATAAATAGCGATCTAGACAGTTAGCCTTACTCGTCAG
TTAGACTGTTTACTCGTCA Run BLAST on NCBI protein sequence of TCONS_00041523-protein >TCONS_00041523-protein ID=TCONS_00041523-protein|Name=TCONS_00041523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MLSTQTYHISKAILGSFNQANEELFGETAGTQCSVNCLYAIFWSNFRRVN
LWKTTDLDRILIEGDKLYKQLDTNSHLSVDEMPRFIEINGVITNFNFLNF
ANGEANLNNDDPFLQIPLSESESLEFNALMIINGFTITIMSRPQGYFIFD
SHSRNELGLLDPSNGKSWVHTI Run BLAST on NCBI transcript from alignment at sc0002898:6634..8152 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041523 ID=TCONS_00041523|Name=TCONS_00041523|organism=Clytia hemisphaerica|type=transcript|length=1519bp|location=Sequence derived from alignment at sc0002898:6634..8152 (Clytia hemisphaerica)
TGACGAGTAAACAGTCTAACTGACGAGTAAGGCTAACTGTCTAGATCGCT
ATTTATCCGGTATTACAGATGTCTGTAGAAATATAAATCtacatattttg
tagaataatAATTCTACCCGTAAATCTACAGACATctgtagaaattttaa
atttacacCATCTACGTATTCTGTAGAATTATGTGTGATAATGTGTTGGT
TCGTTAAACcctctgtttcacttttttgggtttttggctaAATGGTATGC
ACCCATGATTTTCCATTTGAGGGATCAAGCAATCCGAGTTCATTTCGACT
ATGCGAGTCAAAGATAAAGTAGCCCTGAGGCCGACTCATAATTGTGATAG
TAAAACCATTAATGATCATTAAGGCGTTGAATTCTAGACTTTCAGATTCA
CTCAGAGGGATTTGAAGGAAAGGATCATCATTATTTAGGTTCGCTTCACC
AtttgcaaaattcaaaaaattgaaattagttATGACACCGTTTATTTCAA
TGAAACGCGGCATCTCATCAACAGAAAGATGGGAGTTTGTATCAAGCTGT
TTGTATAATTTATCTCCTTCAATTAAGATTCTGTCAAGGTCTGTAGTCTT
CCAAAGATTAACGCGTCGAAAATTAGACCAAAAAATAGCATACAGGCAGT
TAACGCTGCATTGAGTTCCAGCTGTTTCGCCAAATAATTCCTCGTTCGCT
TGATTAAATGAGCCTAAAATAGCTTTTGAAATATGATAAGTTTGCGTACT
CAAcatgtttttcaaatttgactTCAGAAATaagagttttgtttttgttt
tgcagGGAGTATAAGTTAATAGGGCTAAGTAGATCGGACGATGCGACGTG
TAAGCTGAGATGCTGAGATATGTAAGCTGAGATTAGGATGTGTGAAGTAA
ACGTTTGCGTTTGGTGGGTTTCGCAAGTTTCGAACAGTTGGCAGGTTTTG
CACGTTTTGAACGTTTGGTAGATTTTGCAGGTTATTCAAGTTTGACAAGT
GTGACAATTGGTTCAGTAGGTTTAGCAAGTTTAGCAAGTTAAGTATGATA
AGTAAGAGGATGCAAGGAGCTCGCATGCAACCTCAGGGTGTAGCTGCTTG
TCTGATATATAACACAGACAAGCTTAATGCTATCTTTTTGATAACTTGCA
AGTGAGGTAAATGTACCAGTGTACACTTGCTGCtatcttctttgaaaata
actttgaaaaggaatcaataaactttgatataaatcaaaaactctcacct
caatgaaatgatgaaagTTGAGACTGTTTGAACTCTTCTTCCAGCCATTC
AACCATCACGTTTGTGAAACAACTTAGCCAGCTACTACTGcgaatttact
caaatatttcagaaaattgtCCACAGTACGCTTCGGAAGAGGTGGCGCAA
TATAAGGGAGATAACGGCTGATGCAATAACGCCGACGCGCTATATGAAAT
CATTATGAAATTACAACGCATCCCGACGCACACATATCATTATAACCCGG
TTGTCCAAAAATTGAATCG Coding sequence (CDS) from alignment at sc0002898:6634..8152 >TCONS_00041523 ID=TCONS_00041523|Name=TCONS_00041523|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0002898:6634..8152 (Clytia hemisphaerica)
ctaAATGGTATGCACCCATGATTTTCCATTTGAGGGATCAAGCAATCCGA
GTTCATTTCGACTATGCGAGTCAAAGATAAAGTAGCCCTGAGGCCGACTC
ATAATTGTGATAGTAAAACCATTAATGATCATTAAGGCGTTGAATTCTAG
ACTTTCAGATTCACTCAGAGGGATTTGAAGGAAAGGATCATCATTATTTA
GGTTCGCTTCACCAtttgcaaaattcaaaaaattgaaattagttATGACA
CCGTTTATTTCAATGAAACGCGGCATCTCATCAACAGAAAGATGGGAGTT
TGTATCAAGCTGTTTGTATAATTTATCTCCTTCAATTAAGATTCTGTCAA
GGTCTGTAGTCTTCCAAAGATTAACGCGTCGAAAATTAGACCAAAAAATA
GCATACAGGCAGTTAACGCTGCATTGAGTTCCAGCTGTTTCGCCAAATAA
TTCCTCGTTCGCTTGATTAAATGAGCCTAAAATAGCTTTTGAAATATGAT
AAGTTTGCGTACTCAAcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041523-exon-sc0002898-1491911889:6634..8152 | TCONS_00041523-exon-sc0002898-1491911889:6634..8152 | Clytia hemisphaerica | exon |
| TCONS_00041523-exon-sc0002898-1510915933:6634..8152 | TCONS_00041523-exon-sc0002898-1510915933:6634..8152 | Clytia hemisphaerica | exon |
| TCONS_00041523-exon-sc0002898-1575043694:6634..8152 | TCONS_00041523-exon-sc0002898-1575043694:6634..8152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002898 | supercontig | sc0002898:6634..8152 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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