TCONS_00041522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041522
Unique NameTCONS_00041522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041522 ID=TCONS_00041522|Name=TCONS_00041522|organism=Clytia hemisphaerica|type=transcript|length=491bp
ttttggttttgaacattaaaaggTATGCAACCCATgtcttttaaagtttg
ataacgTTTTTGAACTTGAGAAATAcatccaatttttttatttacgaCAA
ATGGAAAAAGACAGTACTTACTTTGAGATTCAATTTATTCAAGTCAATGA
ACTCAAAGAAGAGCTTAAAGACAGTCTCCAACGAGACTTTTCAGCATTTG
TAAGAAATTATTCAAAGAAGCGCAAAAATGATGGCGTTGACGGAAATGAT
TCTAGTGGTAAGCGTCAAAAAAAACATCAAGAAAGTAATAGAGCATggta
caaaaaaaacaaagaaactattattgaaaataaatttatttgaatCTGAA
TTGATTTATACTCGTCGGGAGCTAATTTCGAGAAAGTTTTGACATTCGCA
CGCAGTCCCTTTCGTAGCTCTTTCAGTTCAGTAAGGATACTTTCAGTGTC
TTTGATTGAAGCATTATGGATTGAGTGTTCATCAATTAAGT
Run BLAST on NCBI

transcript from alignment at sc0002898:5244..5734

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041522 ID=TCONS_00041522|Name=TCONS_00041522|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0002898:5244..5734 (Clytia hemisphaerica)
ACTTAATTGATGAACACTCAATCCATAATGCTTCAATCAAAGACACTGAA
AGTATCCTTACTGAACTGAAAGAGCTACGAAAGGGACTGCGTGCGAATGT
CAAAACTTTCTCGAAATTAGCTCCCGACGAGTATAAATCAATTCAGattc
aaataaatttattttcaataatagtttctttgttttttttgtaccATGCT
CTATTACTTTCTTGATGTTTTTTTTGACGCTTACCACTAGAATCATTTCC
GTCAACGCCATCATTTTTGCGCTTCTTTGAATAATTTCTTACAAATGCTG
AAAAGTCTCGTTGGAGACTGTCTTTAAGCTCTTCTTTGAGTTCATTGACT
TGAATAAATTGAATCTCAAAGTAAGTACTGTCTTTTTCCATTTGtcgtaa
ataaaaaaattggatgTATTTCTCAAGTTCAAAAAcgttatcaaacttta
aaagacATGGGTTGCATAccttttaatgttcaaaaccaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025469XLOC_025469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041522-exon-sc0002898-1491911889:5244..5734TCONS_00041522-exon-sc0002898-1491911889:5244..5734Clytia hemisphaericaexon
TCONS_00041522-exon-sc0002898-1510915933:5244..5734TCONS_00041522-exon-sc0002898-1510915933:5244..5734Clytia hemisphaericaexon
TCONS_00041522-exon-sc0002898-1575043694:5244..5734TCONS_00041522-exon-sc0002898-1575043694:5244..5734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002898supercontigsc0002898:5244..5734 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00646	0.865112	0.997121	0.975527	1.35727	0.268133	0.646982	0.302848	0.636094	0.752777	0.50984	0.699785	0.418353	0.434464	0.357189	0.766636	0.159476	0.387205	0.534945	0.559781	0.60815	0.614977	0.144249	0.393429	0.405222	1.13865	0.690029	0.184104	0.698183	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top