TCONS_00041511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041511
Unique NameTCONS_00041511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041511 ID=TCONS_00041511|Name=TCONS_00041511|organism=Clytia hemisphaerica|type=transcript|length=541bp
CATGCACATGTCATTTAATAATCTATACTGtccttttgctttctttttaa
tGCAAAGAAACAATTTCCCAAGTGGATAGTACACACTTTAAAACAAACAG
AAATGGGccagaaatagaaaataaatagataataaatagatttataaaag
tcATTAAATTTAATGGCAATGGAGAACCATGTTGAGTCTTTCATCTCTTA
CCATAACCACGGTCAGAGATAAGCAACTACTTCCCATAAAACACGGTCAG
TATTATATGCATGAGAGatcaacaatgatagaaattAATTTGACTTTCCT
CTTAACtaattaatatatttaaatattttgactaaAAGTTCACAATTTGT
CTTTAACTTCTGATAAAAGAGAATCATGTTGAACCTTTCATCTCTTACCA
TAACCACGGTCAGAGATAAGCAAGTACTTCCCATNTTGGCTGAGTTTTAT
CTCTTTTACATCGTACGCATTCATAATTACTTTTATCATTTGGAGTCTTA
CAAAGTGGCCAGCCTTCCTTACAAGTTTTGCACTGAAAAAT
Run BLAST on NCBI

transcript from alignment at sc0002897:8415..9143+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041511 ID=TCONS_00041511|Name=TCONS_00041511|organism=Clytia hemisphaerica|type=transcript|length=729bp|location=Sequence derived from alignment at sc0002897:8415..9143+ (Clytia hemisphaerica)
CATGCACATGTCATTTAATAATCTATACTGtccttttgctttctttttaa
tGCAAAGAAACAATTTCCCAAGTGGATAGTACACACTTTAAAACAAACAG
AAATGGGccagaaatagaaaataaatagataataaatagatttataaaag
tcATTAAATTTAATGGCAATGGAGAACCATGTTGAGTCTTTCATCTCTTA
CCATAACCACGGTCAGAGATAAGCAACTACTTCCCATAAAACACGGTCAG
TATTATATGCATGAGAGatcaacaatgatagaaattAATTTGACTTTCCT
CTTAACtaatatatttaaatattttgactaaAAGTTCATAATTTGTCTTT
AACTTCTGATAAAAGAGAATCATGTTGAACCTTTCATCTCTTACCATAAC
CACGGTGAGAGATAAGTAACTACTTCCCATAAAACACGGTCAGTATTATA
TGCATGAGAGATCAACAATGATAGAAGTCAATTCACTTTCCTCTTAACta
atatatttaaatattttgactaaAAGTTCACAATTTGTCTTTAACTTCTG
ATAAAAGAGAATCATGTTGAACCTTTCATCTCTTACCATAACCACGGTCA
GAGATAAGCAAGTACTTCCCATNTTGGCTGAGTTTTATCTCTTTTACATC
GTACGCATTCATAATTACTTTTATCATTTGGAGTCTTACAAAGTGGCCAG
CCTTCCTTACAAGTTTTGCACTGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025460XLOC_025460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041511-exon-sc0002897-1491911889:8415..8724TCONS_00041511-exon-sc0002897-1491911889:8415..8724Clytia hemisphaericaexon
TCONS_00041511-exon-sc0002897-1510915933:8415..8724TCONS_00041511-exon-sc0002897-1510915933:8415..8724Clytia hemisphaericaexon
TCONS_00041511-exon-sc0002897-1575043694:8415..8724TCONS_00041511-exon-sc0002897-1575043694:8415..8724Clytia hemisphaericaexon
TCONS_00041511-exon-sc0002897-1491911889:8913..9143TCONS_00041511-exon-sc0002897-1491911889:8913..9143Clytia hemisphaericaexon
TCONS_00041511-exon-sc0002897-1510915933:8913..9143TCONS_00041511-exon-sc0002897-1510915933:8913..9143Clytia hemisphaericaexon
TCONS_00041511-exon-sc0002897-1575043694:8913..9143TCONS_00041511-exon-sc0002897-1575043694:8913..9143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002897supercontigsc0002897:8415..9143 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.93862	0	0	0.221111	0.425792	0	0	0.376016	0	0.23874	0	0.746795	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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