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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041508 ID=TCONS_00041508|Name=TCONS_00041508|organism=Clytia hemisphaerica|type=transcript|length=2783bp
GCACACTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAA
GATATATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTG
TAACTGTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACT
TTTGCGTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTG
GCGACACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATT
TGAGAGACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTT
GTGATACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAAC
ACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCT
CAAATTCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAG
CTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAA
GGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAA
CAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAG
ATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCT
TTCTACTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTC
CTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATA
CAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAA
TGCCCATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATG
TACGCCGATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAA
CTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGT
ACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCA
TGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTT
GTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACAT
GGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAG
ACCTTGTGACACAGGGAAAGATACTTGTAATAAAACTTCATCCAACTGTA
CAAACACCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGATGGT
TATTTGAAGTTTAACAACTCCTTGGATCAATGTCATGAGTATTGTCGCAT
TGAGGCTGATACTTGCAACGATGTATCTACAACATGCTTGTCTACTCCTG
GCAAAGGGCGACATTACGAATGTCCTTGCAAAGATGGTTTTGAAAGATTA
GGAAATGACACGGACAGTTGTACACCGATTCCAAGACCTTGTGACACGGG
AGACGATACTTGCAACAAGACAACATCATCTTGTAACAACACTCTTACAA
ATCCTTACCACAATTGTACTTGCAAGCCGGGGTATTTGAAAGAAGGAAAC
TCAATCAACAAATGTTTAGATTTCTGTGCATCTGGTGATCACAACTGCAA
CCTTCAATCAACTGTGTGTCGACCAACACCAGGACAAGGGTCACATTTCC
AATGTGTTTGTAGAGACGGATATGAAGTTATTCCTGGTAATAAAACAACT
TGTAAAAAGATTGTTGTCTCCTCGTCAATGATATTGCCAAGCACTTCAGT
GATCAGTCAATTAGCCACTCCTACGACCAGTTTTGTTGAGCAGCCTGGCC
CCCAAACAACTGTCGTGCAACTAACAGAAACAAAGACGACACCGATAGTT
GCTACAACCGAAGTTGTTCAGCCACCAGCAACCGGAACTGTAGTCGTACA
ACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTTCAGAGACAAAGACAA
CACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGGAACT
GTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTTCAGA
GACAAAGACAACACCGATAGTTGCTACAACTGAAGTTATTCAGCCACCAG
TGACACAGACTGAAGTCGTGCAACCGACAGAAGCAAAGACAACACCGATA
GTTGCTACAACCGAACTTGTCCAACCACCAGTGACACAGACTGAAGTCGT
GCAACCGACAGAAACAAGGACAACACCAATAGTTGCTACAACTGAAGTTG
TTCAGCCACCAGTGACACAGACAGAAGTCGTGCAACCGACAGAAACAAAG
ACAACACCGATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCA
GACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTA
CAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGTGCAACCG
ACAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCC
ACCAGTGACCCAGACAGAAGTCGTGCAACCTTCAGTTAGCCAGACAGAAG
TCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACTGAA
GTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAGCCGACAGAAAC
AAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCCAATCACCAGTGA
CACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTT
GCTACAACTGAAGTTGTTCAGCCACCAGTGACN Run BLAST on NCBI transcript from alignment at sc0002895:16457..22401- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041508 ID=TCONS_00041508|Name=TCONS_00041508|organism=Clytia hemisphaerica|type=transcript|length=5945bp|location=Sequence derived from alignment at sc0002895:16457..22401- (Clytia hemisphaerica)
GCACACTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAA
GATATATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTG
TAACTGTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACT
TTTGCGTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTG
GCGACACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATT
TGAGAGACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTT
GTGATACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAAC
ACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCT
CAAATTCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAG
CTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAA
GGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAA
CAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAG
ATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCT
TTCTACTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTC
CTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATA
CAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAA
TGCCCATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATG
TACGCCGATGCCAAGGCCTTGTGACACAGGGAAAGATACTTGTAATAAGA
CAAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTACTACAACTGC
TCGTGTGGTGATGGTTATCTCAAATTCAACAACTCAGTTGATGATTGTCA
AGACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGT
GTGAGGCAACTCCTCGTAAAGGACGACATTATGAATGTCCATGTAAATTT
GGTTTCGAGAGATTAGATTACAACACAGACAGTTGCACACCAATGCCAAG
ACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTA
CAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGT
TATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTAT
TGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTG
GCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTC
GACAACAACATGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGG
GAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAACACTTTGACAG
CTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAAC
AACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTG
CAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATT
ATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGAC
AGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAA
TAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACA
ATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAA
TGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTAC
AACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTA
AACATGGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGCCGATG
CCAAGACCTTGTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAA
TTGCACAAACACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTG
ATGGTTATCTCAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGT
CATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAAC
TCCTGGTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGA
GATTAGATAACAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGAC
ACAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTT
CGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGT
TTAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGAT
ACCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACG
ACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACA
TGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACT
TGTAACAAGACAAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTA
CTTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACAACTCCGTTG
ATGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACT
TCAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATTATGAATGTCC
ATGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGACAGTTGCACAC
CAATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCA
TCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTG
TGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGT
ATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATG
TCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTT
TGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAGACCTT
GTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAAC
ACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCT
CAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAG
CTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAA
GGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAA
CAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAG
ATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCT
TTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTC
CTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATA
CAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAA
TGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGACAAATG
TACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAATAAAA
CTTCATCCAACTGTACAAACACCTTCGAAGCTCCTTTCTACTACAATTGT
ACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGGATCAATGTCA
TGAGTATTGTCGCATTGAGGCTGATACTTGCAACGATGTATCTACAACAT
GCTTGTCTACTCCTGGCAAAGGGCGACATTACGAATGTCCTTGCAAAGAT
GGTTTTGAAAGATTAGGAAATGACACGGACAGTTGTACACCGATTCCAAG
ACCTTGTGACACGGGAGACGATACTTGCAACAAGACAACATCATCTTGTA
ACAACACTCTTACAAATCCTTACCACAATTGTACTTGCAAGCCGGGGTAT
TTGAAAGAAGGAAACTCAATCAACAAATGTTTAGATTTCTGTGCATCTGG
TGATCACAACTGCAACCTTCAATCAACTGTGTGTCGACCAACACCAGGAC
AAGGGTCACATTTCCAATGTGTTTGTAGAGACGGATATGAAGTTATTCCT
GGTAATAAAACAACTTGTAAAAAGATTGTTGTCTCCTCGTCAATGATATT
GCCAAGCACTTCAGTGATCAGTCAATTAGCCACTCCTACGACCAGTTTTG
TTGAGCAGCCTGGCCCCCAAACAACTGTCGTGCAACTAACAGAAACAAAG
ACGACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGG
AACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTT
CAGAGACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCA
CCAGCAACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGT
CGTGCAACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACTGAAG
TTATTCAGCCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAGCA
AAGACAACACCGATAGTTGCTACAACCGAACTTGTCCAACCACCAGTGAC
ACAGACTGAAGTCGTGCAACCGACAGAAACAAGGACAACACCAATAGTTG
CTACAACTGAAGTTGTTCAGCCACCAGTGACACAGACAGAAGTCGTGCAA
CCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTTGTTCA
GCCACCAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAA
CACCGATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACA
GAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAAC
CGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAG
AAACAAAGACAACACCAATAGTTGCTACAACCAAAGTTGTTCAGCCACCA
GTGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGAT
AGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCG
TGCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACAAAG
ACAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCA
GACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTA
CAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCG
ACAGAAACAAAGACAACACCGATAGTCGCTACAACTGAAGTTGTTCAGCC
ACCAGTGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACAC
CGATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAG
GTCGTGCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAAC
AAAGACAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGA
CCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTT
GCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCA
GCCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCC
AATCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACA
ACACCGATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00041508-exon-sc0002895-1575043694:21537..22401 | TCONS_00041508-exon-sc0002895-1575043694:21537..22401 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1575043694:17318..18971 | TCONS_00041508-exon-sc0002895-1575043694:17318..18971 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1575043694:16772..16801 | TCONS_00041508-exon-sc0002895-1575043694:16772..16801 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1575043694:16457..16690 | TCONS_00041508-exon-sc0002895-1575043694:16457..16690 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1510915933:21537..22401 | TCONS_00041508-exon-sc0002895-1510915933:21537..22401 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1510915933:17318..18971 | TCONS_00041508-exon-sc0002895-1510915933:17318..18971 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1510915933:16772..16801 | TCONS_00041508-exon-sc0002895-1510915933:16772..16801 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1510915933:16457..16690 | TCONS_00041508-exon-sc0002895-1510915933:16457..16690 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1491911889:21537..22401 | TCONS_00041508-exon-sc0002895-1491911889:21537..22401 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1491911889:17318..18971 | TCONS_00041508-exon-sc0002895-1491911889:17318..18971 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1491911889:16772..16801 | TCONS_00041508-exon-sc0002895-1491911889:16772..16801 | Clytia hemisphaerica | exon |
| TCONS_00041508-exon-sc0002895-1491911889:16457..16690 | TCONS_00041508-exon-sc0002895-1491911889:16457..16690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002895 | supercontig | sc0002895:16457..22401 - |
Blast
The following BLAST results are available for this feature:
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