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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041507 ID=TCONS_00041507|Name=TCONS_00041507|organism=Clytia hemisphaerica|type=transcript|length=3788bp
GCACACTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAA
GATATATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTG
TAACTGTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACT
TTTGCGTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTG
GCGACACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATT
TGAGAGACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTT
GTGATACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAAC
ACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCT
CAAATTCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAG
CTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAA
GGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAA
CAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAG
ATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCT
TTCTACTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTC
CTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATA
CAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAA
TGCCCATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATG
TACGCCGATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAA
CTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGT
ACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCA
TGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTT
GTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACAT
GGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAG
ACCTTGTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCA
CAAACACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGT
TATCTCAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATAT
TGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTG
GTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTA
GATAACAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGG
GAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAG
CTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAAC
AGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTG
CAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACT
ACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGAC
AAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAA
TAAAACTTCATCCAACTGTACAAACACCTTCGAAGCTCCTTTCTACTACA
ATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGGATCAA
TGTCATGAGTATTGTCGCATTGAGGCTGATACTTGCAACGATGTATCTAC
AACATGCTTGTCTACTCCTGGCAAAGGGCGACATTACGAATGTCCTTGCA
AAGATGGTTTTGAAAGATTAGGAAATGACACGGACAGTTGTACACCGATT
CCAAGACCTTGTGACACGGGAGACGATACTTGCAACAAGACAACATCATC
TTGTAACAACACTCTTACAAATCCTTACCACAATTGTACTTGCAAGCCGG
GGTATTTGAAAGAAGGAAACTCAATCAACAAATGTTTAGATTTCTGTGCA
TCTGGTGATCACAACTGCAACCTTCAATCAACTGTGTGTCGACCAACACC
AGGACAAGGGTCACATTTCCAATGTGTTTGTAGAGACGGATATGAAGTTA
TTCCTGGTAATAAAACAACTTGTAAAAAGATTGTTGTCTCCTCGTCAATG
ATATTGCCAAGCACTTCAGTGATCAGTCAATTAGCCACTCCTACGACCAG
TTTTGTTGAGCAGCCTGGCCCCCAAACAACTGTCGTGCAACTAACAGAAA
CAAAGACGACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCA
ACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCA
ACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTC
AGCCACCAGCAACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACA
GAAGTCGTGCAACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAAC
TGAAGTTATTCAGCCACCAGTGACACAGACTGAAGTCGTGCAACCGACAG
AAGCAAAGACAACACCGATAGTTGCTACAACCGAACTTGTCCAACCACCA
GTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAGGACAACACCAAT
AGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACACAGACAGAAGTCG
TGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTT
GTTCAGCCACCAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAA
GACAACACCGATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCC
AGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCT
ACAACCGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACC
GACAGAAACAAAGACAACACCAATAGTTGCTACAACCAAAGTTGTTCAGC
CACCAGTGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACA
CCGATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGA
GGTCGTGCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAA
CAAAGACAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTG
ACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGT
TGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGC
AACCGACAGAAACAAAGACAACACCGATAGTCGCTACAACTGAAGTTGTT
CAGCCACCAGTGACCCAGACAGATGTCGTGCAACCTTCAGTTAGCCAGAC
AGAAGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAA
CTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAGCCGACA
GAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCCAATCACC
AGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACAACACCGA
TAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACN Run BLAST on NCBI transcript from alignment at sc0002895:16457..22401- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041507 ID=TCONS_00041507|Name=TCONS_00041507|organism=Clytia hemisphaerica|type=transcript|length=5945bp|location=Sequence derived from alignment at sc0002895:16457..22401- (Clytia hemisphaerica)
GCACACTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAA
GATATATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTG
TAACTGTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACT
TTTGCGTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTG
GCGACACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATT
TGAGAGACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTT
GTGATACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAAC
ACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCT
CAAATTCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAG
CTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAA
GGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAA
CAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAG
ATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCT
TTCTACTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTC
CTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATA
CAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAA
TGCCCATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATG
TACGCCGATGCCAAGGCCTTGTGACACAGGGAAAGATACTTGTAATAAGA
CAAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTACTACAACTGC
TCGTGTGGTGATGGTTATCTCAAATTCAACAACTCAGTTGATGATTGTCA
AGACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGT
GTGAGGCAACTCCTCGTAAAGGACGACATTATGAATGTCCATGTAAATTT
GGTTTCGAGAGATTAGATTACAACACAGACAGTTGCACACCAATGCCAAG
ACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTA
CAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGT
TATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTAT
TGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTG
GCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTC
GACAACAACATGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGG
GAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAACACTTTGACAG
CTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAAC
AACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTG
CAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATT
ATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGAC
AGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAA
TAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACA
ATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAA
TGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTAC
AACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTA
AACATGGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGCCGATG
CCAAGACCTTGTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAA
TTGCACAAACACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTG
ATGGTTATCTCAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGT
CATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAAC
TCCTGGTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGA
GATTAGATAACAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGAC
ACAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTT
CGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGT
TTAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGAT
ACCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACG
ACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACA
TGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACT
TGTAACAAGACAAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTA
CTTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACAACTCCGTTG
ATGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACT
TCAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATTATGAATGTCC
ATGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGACAGTTGCACAC
CAATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCA
TCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTG
TGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGT
ATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATG
TCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTT
TGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAGACCTT
GTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAAC
ACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCT
CAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAG
CTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAA
GGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAA
CAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAG
ATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCT
TTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTC
CTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATA
CAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAA
TGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGACAAATG
TACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAATAAAA
CTTCATCCAACTGTACAAACACCTTCGAAGCTCCTTTCTACTACAATTGT
ACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGGATCAATGTCA
TGAGTATTGTCGCATTGAGGCTGATACTTGCAACGATGTATCTACAACAT
GCTTGTCTACTCCTGGCAAAGGGCGACATTACGAATGTCCTTGCAAAGAT
GGTTTTGAAAGATTAGGAAATGACACGGACAGTTGTACACCGATTCCAAG
ACCTTGTGACACGGGAGACGATACTTGCAACAAGACAACATCATCTTGTA
ACAACACTCTTACAAATCCTTACCACAATTGTACTTGCAAGCCGGGGTAT
TTGAAAGAAGGAAACTCAATCAACAAATGTTTAGATTTCTGTGCATCTGG
TGATCACAACTGCAACCTTCAATCAACTGTGTGTCGACCAACACCAGGAC
AAGGGTCACATTTCCAATGTGTTTGTAGAGACGGATATGAAGTTATTCCT
GGTAATAAAACAACTTGTAAAAAGATTGTTGTCTCCTCGTCAATGATATT
GCCAAGCACTTCAGTGATCAGTCAATTAGCCACTCCTACGACCAGTTTTG
TTGAGCAGCCTGGCCCCCAAACAACTGTCGTGCAACTAACAGAAACAAAG
ACGACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGG
AACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTT
CAGAGACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCA
CCAGCAACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGT
CGTGCAACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACTGAAG
TTATTCAGCCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAGCA
AAGACAACACCGATAGTTGCTACAACCGAACTTGTCCAACCACCAGTGAC
ACAGACTGAAGTCGTGCAACCGACAGAAACAAGGACAACACCAATAGTTG
CTACAACTGAAGTTGTTCAGCCACCAGTGACACAGACAGAAGTCGTGCAA
CCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTTGTTCA
GCCACCAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAA
CACCGATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACA
GAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAAC
CGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAG
AAACAAAGACAACACCAATAGTTGCTACAACCAAAGTTGTTCAGCCACCA
GTGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGAT
AGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCG
TGCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACAAAG
ACAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCA
GACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTA
CAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCG
ACAGAAACAAAGACAACACCGATAGTCGCTACAACTGAAGTTGTTCAGCC
ACCAGTGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACAC
CGATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAG
GTCGTGCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAAC
AAAGACAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGA
CCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTT
GCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCA
GCCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCC
AATCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACA
ACACCGATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041507-exon-sc0002895-1575043694:21537..22401 | TCONS_00041507-exon-sc0002895-1575043694:21537..22401 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1575043694:16883..19541 | TCONS_00041507-exon-sc0002895-1575043694:16883..19541 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1575043694:16772..16801 | TCONS_00041507-exon-sc0002895-1575043694:16772..16801 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1575043694:16457..16690 | TCONS_00041507-exon-sc0002895-1575043694:16457..16690 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1510915933:21537..22401 | TCONS_00041507-exon-sc0002895-1510915933:21537..22401 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1510915933:16883..19541 | TCONS_00041507-exon-sc0002895-1510915933:16883..19541 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1510915933:16772..16801 | TCONS_00041507-exon-sc0002895-1510915933:16772..16801 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1510915933:16457..16690 | TCONS_00041507-exon-sc0002895-1510915933:16457..16690 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1491911889:21537..22401 | TCONS_00041507-exon-sc0002895-1491911889:21537..22401 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1491911889:16883..19541 | TCONS_00041507-exon-sc0002895-1491911889:16883..19541 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1491911889:16772..16801 | TCONS_00041507-exon-sc0002895-1491911889:16772..16801 | Clytia hemisphaerica | exon |
| TCONS_00041507-exon-sc0002895-1491911889:16457..16690 | TCONS_00041507-exon-sc0002895-1491911889:16457..16690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002895 | supercontig | sc0002895:16457..22401 - |
Blast
The following BLAST results are available for this feature:
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