TCONS_00041505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041505
Unique NameTCONS_00041505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041505 ID=TCONS_00041505|Name=TCONS_00041505|organism=Clytia hemisphaerica|type=transcript|length=2212bp
CACACTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAAG
ATATATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTGT
AACTGTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACTT
TTGCGTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTGG
CGACACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATTT
GAGAGACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTTG
TGATACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAACA
CTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTC
AAATTCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAGC
TGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAAG
GACGACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAAC
AACATGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAGA
TACTTGTAATAAAACTTCATCCAACTGTACAAACACCTTCGAAGCTCCTT
TCTACTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCC
TTGGATCAATGTCATGAGTATTGTCGCATTGAGGCTGATACTTGCAACGA
TGTATCTACAACATGCTTGTCTACTCCTGGCAAAGGGCGACATTACGAAT
GTCCTTGCAAAGATGGTTTTGAAAGATTAGGAAATGACACGGACAGTTGT
ACACCGATTCCAAGACCTTGTGACACGGGAGACGATACTTGCAACAAGAC
AACATCATCTTGTAACAACACTCTTACAAATCCTTACCACAATTGTACTT
GCAAGCCGGGGTATTTGAAAGAAGGAAACTCAATCAACAAATGTTTAGAT
TTCTGTGCATCTGGTGATCACAACTGCAACCTTCAATCAACTGTGTGTCG
ACCAACACCAGGACAAGGGTCACATTTCCAATGTGTTTGTAGAGACGGAT
ATGAAGTTATTCCTGGTAATAAAACAACTTGTAAAAAGATTGTTGTCTCC
TCGTCAATGATATTGCCAAGCACTTCAGTGATCAGTCAATTAGCCACTCC
TACGACCAGTTTTGTTGAGCAGCCTGGCCCCCAAACAACTGTCGTGCAAC
TAACAGAAACAAAGACGACACCGATAGTTGCTACAACCGAAGTTGTTCAG
CCACCAGCAACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGA
AGTCGTGCAACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACCG
AAGTTGTTCAGCCACCAGCAACCGGAACTGTAGTCGTACAACCTTCAGTC
AGTCAGACAGAAGTCGTGCAACCTTCAGAGACAAAGACAACACCGATAGT
TGCTACAACTGAAGTTATTCAGCCACCAGTGACACAGACTGAAGTCGTGC
AACCGACAGAAGCAAAGACAACACCGATAGTTGCTACAACCGAACTTGTC
CAACCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAGGAC
AACACCAATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACACAGA
CAGAAGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACA
ACCAAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGTGCAACCGAC
AGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTTGTTCAGCCAC
CAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCG
ATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGT
CGTGCAACCTTCAGTTAGCCAGACAGAAGTCGTGCAACCGACAGAAACAA
AGACAACACCGATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACC
CAGACAGAAGTCGTGCAGCCGACAGAAACAAAGACAACACCGATAGTTGC
TACAACCGAAGTTGTCCAATCACCAGTGACACAGACTGAAGTCGTGCAAC
CGACAGAAACAAAGACAACACCGATAGTTGCTACAACTGAAGTTGTTCAG
CCACCAGTGACN
Run BLAST on NCBI

transcript from alignment at sc0002895:16457..22400-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041505 ID=TCONS_00041505|Name=TCONS_00041505|organism=Clytia hemisphaerica|type=transcript|length=5944bp|location=Sequence derived from alignment at sc0002895:16457..22400- (Clytia hemisphaerica)
CACACTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAAG
ATATATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTGT
AACTGTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACTT
TTGCGTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTGG
CGACACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATTT
GAGAGACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTTG
TGATACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAACA
CTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTC
AAATTCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAGC
TGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAAG
GACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAAC
AACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGA
TACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTT
TCTACTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCC
TTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATAC
AACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAAT
GCCCATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATGT
ACGCCGATGCCAAGGCCTTGTGACACAGGGAAAGATACTTGTAATAAGAC
AAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTACTACAACTGCT
CGTGTGGTGATGGTTATCTCAAATTCAACAACTCAGTTGATGATTGTCAA
GACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGTG
TGAGGCAACTCCTCGTAAAGGACGACATTATGAATGTCCATGTAAATTTG
GTTTCGAGAGATTAGATTACAACACAGACAGTTGCACACCAATGCCAAGA
CCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTAC
AAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTT
ATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTATT
GAGGCTGATACCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTGG
CAAAGGACGACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTCG
ACAACAACATGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGGG
AAAGATACTTGTAACAAGACAAGATCCAATTGCACAAACACTTTGACAGC
TCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACA
ACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTGC
AACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATTA
TGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGACA
GTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAAT
AAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAA
TTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAAT
GTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACA
ACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAA
ACATGGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGC
CAAGACCTTGTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAAT
TGCACAAACACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGA
TGGTTATCTCAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTC
ATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACT
CCTGGTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAG
ATTAGATAACAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACA
CAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTC
GAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTT
TAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATA
CCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGA
CACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACAT
GGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTT
GTAACAAGACAAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTAC
TTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACAACTCCGTTGA
TGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACTT
CAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATTATGAATGTCCA
TGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGACAGTTGCACACC
AATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCAT
CCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGT
GAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTA
TTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATGT
CTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTTT
GAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAGACCTTG
TGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAACA
CTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTC
AAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAGC
TGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAG
GACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAAC
AACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGA
TACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTT
TCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCC
TTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATAC
AACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAAT
GTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGACAAATGT
ACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAATAAAAC
TTCATCCAACTGTACAAACACCTTCGAAGCTCCTTTCTACTACAATTGTA
CCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGGATCAATGTCAT
GAGTATTGTCGCATTGAGGCTGATACTTGCAACGATGTATCTACAACATG
CTTGTCTACTCCTGGCAAAGGGCGACATTACGAATGTCCTTGCAAAGATG
GTTTTGAAAGATTAGGAAATGACACGGACAGTTGTACACCGATTCCAAGA
CCTTGTGACACGGGAGACGATACTTGCAACAAGACAACATCATCTTGTAA
CAACACTCTTACAAATCCTTACCACAATTGTACTTGCAAGCCGGGGTATT
TGAAAGAAGGAAACTCAATCAACAAATGTTTAGATTTCTGTGCATCTGGT
GATCACAACTGCAACCTTCAATCAACTGTGTGTCGACCAACACCAGGACA
AGGGTCACATTTCCAATGTGTTTGTAGAGACGGATATGAAGTTATTCCTG
GTAATAAAACAACTTGTAAAAAGATTGTTGTCTCCTCGTCAATGATATTG
CCAAGCACTTCAGTGATCAGTCAATTAGCCACTCCTACGACCAGTTTTGT
TGAGCAGCCTGGCCCCCAAACAACTGTCGTGCAACTAACAGAAACAAAGA
CGACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGGA
ACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTTC
AGAGACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCAC
CAGCAACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTC
GTGCAACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACTGAAGT
TATTCAGCCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAGCAA
AGACAACACCGATAGTTGCTACAACCGAACTTGTCCAACCACCAGTGACA
CAGACTGAAGTCGTGCAACCGACAGAAACAAGGACAACACCAATAGTTGC
TACAACTGAAGTTGTTCAGCCACCAGTGACACAGACAGAAGTCGTGCAAC
CGACAGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTTGTTCAG
CCACCAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAAC
ACCGATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAG
AGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACC
GAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAGA
AACAAAGACAACACCAATAGTTGCTACAACCAAAGTTGTTCAGCCACCAG
TGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGATA
GTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGT
GCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACAAAGA
CAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAG
ACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTAC
AACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGA
CAGAAACAAAGACAACACCGATAGTCGCTACAACTGAAGTTGTTCAGCCA
CCAGTGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACC
GATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGG
TCGTGCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACA
AAGACAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGAC
CCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTG
CTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAG
CCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCCA
ATCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACAA
CACCGATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025457XLOC_025457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041505-exon-sc0002895-1575043694:21895..22400TCONS_00041505-exon-sc0002895-1575043694:21895..22400Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1575043694:17318..18759TCONS_00041505-exon-sc0002895-1575043694:17318..18759Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1575043694:16772..16801TCONS_00041505-exon-sc0002895-1575043694:16772..16801Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1575043694:16457..16690TCONS_00041505-exon-sc0002895-1575043694:16457..16690Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1510915933:21895..22400TCONS_00041505-exon-sc0002895-1510915933:21895..22400Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1510915933:17318..18759TCONS_00041505-exon-sc0002895-1510915933:17318..18759Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1510915933:16772..16801TCONS_00041505-exon-sc0002895-1510915933:16772..16801Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1510915933:16457..16690TCONS_00041505-exon-sc0002895-1510915933:16457..16690Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1491911889:21895..22400TCONS_00041505-exon-sc0002895-1491911889:21895..22400Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1491911889:17318..18759TCONS_00041505-exon-sc0002895-1491911889:17318..18759Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1491911889:16772..16801TCONS_00041505-exon-sc0002895-1491911889:16772..16801Clytia hemisphaericaexon
TCONS_00041505-exon-sc0002895-1491911889:16457..16690TCONS_00041505-exon-sc0002895-1491911889:16457..16690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002895supercontigsc0002895:16457..22400 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.871	18.9405	8.91954	6.71453	18.5197	14.6107	4.42439	7.30162	7.8323	9.16559	4.38044	2.27048	0.119482	0.0957087	0.135846	0.181902	11.0553	11.6307	0.141725	0.391853	27.8047	24.6106	7.89549	14.7064	5.53987	8.1086	4.51931	1.3802	2.13144	2.35122
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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