TCONS_00041504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041504
Unique NameTCONS_00041504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041504 ID=TCONS_00041504|Name=TCONS_00041504|organism=Clytia hemisphaerica|type=transcript|length=2940bp
CTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAAGATAT
ATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTGTAACT
GTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACTTTTGC
GTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTGGCGAC
ACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATTTGAGA
GACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTTGTGAT
ACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAACACTTT
GACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAAT
TCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGAT
TCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAAGGACG
ACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACA
CAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACT
TGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTA
CTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGG
ATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATACAACC
TCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGCCC
ATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATGTACGC
CGATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCA
TCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTG
TGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGT
ATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATG
TCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTT
TGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAGACCTT
GTGACACAGGGAAAGATACTTGTAATAAAACTTCATCCAACTGTACAAAC
ACCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGATGGTTATTT
GAAGTTTAACAACTCCTTGGATCAATGTCATGAGTATTGTCGCATTGAGG
CTGATACTTGCAACGATGTATCTACAACATGCTTGTCTACTCCTGGCAAA
GGGCGACATTACGAATGTCCTTGCAAAGATGGTTTTGAAAGATTAGGAAA
TGACACGGACAGTTGTACACCGATTCCAAGACCTTGTGACACGGGAGACG
ATACTTGCAACAAGACAACATCATCTTGTAACAACACTCTTACAAATCCT
TACCACAATTGTACTTGCAAGCCGGGGTATTTGAAAGAAGGAAACTCAAT
CAACAAATGTTTAGATTTCTGTGCATCTGGTGATCACAACTGCAACCTTC
AATCAACTGTGTGTCGACCAACACCAGGACAAGGGTCACATTTCCAATGT
GTTTGTAGAGACGGATATGAAGTTATTCCTGGTAATAAAACAACTTGTAA
AAAGATTGTTGTCTCCTCGTCAATGATATTGCCAAGCACTTCAGTGATCA
GTCAATTAGCCACTCCTACGACCAGTTTTGTTGAGCAGCCTGGCCCCCAA
ACAACTGTCGTGCAACTAACAGAAACAAAGACGACACCGATAGTTGCTAC
AACCGAAGTTGTTCAGCCACCAGCAACCGGAACTGTAGTCGTACAACCTT
CAGTCAGTCAGACAGAAGTCGTGCAACCTTCAGAGACAAAGACAACACCG
ATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGGAACTGTAGT
CGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTTCAGAGACAA
AGACAACACCGATAGTTGCTACAACTGAAGTTATTCAGCCACCAGTGACA
CAGACTGAAGTCGTGCAACCGACAGAAGCAAAGACAACACCGATAGTTGC
TACAACCGAACTTGTCCAACCACCAGTGACACAGACTGAAGTCGTGCAAC
CGACAGAAACAAGGACAACACCAATAGTTGCTACAACTGAAGTTGTTCAG
CCACCAGTGACACAGACAGAAGTCGTGCAACCGACAGAAACAAAGACAAC
ACCGATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAG
AGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACC
AAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGTGCAACCGACAGA
AACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAG
TGACCCAGACAGAAGTCGTGCAACCGACAGAAACAAAGACAACACCAATA
GTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAGATGTCGT
GCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACTGAAGTTG
TTCAGCCACCAGTGACCCAGACAGAGGTCGTGCAACCTTCAGTTAGCCAG
ACAGAAGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTAC
AACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAGCCGA
CAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCCAATCA
CCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACAACACC
GATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACN
Run BLAST on NCBI

transcript from alignment at sc0002895:16457..22396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041504 ID=TCONS_00041504|Name=TCONS_00041504|organism=Clytia hemisphaerica|type=transcript|length=5940bp|location=Sequence derived from alignment at sc0002895:16457..22396- (Clytia hemisphaerica)
CTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAAGATAT
ATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTGTAACT
GTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACTTTTGC
GTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTGGCGAC
ACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATTTGAGA
GACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTTGTGAT
ACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAACACTTT
GACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAAT
TCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGAT
TCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAAGGACG
ACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACA
CAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACT
TGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTA
CTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGG
ATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATACAACC
TCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGCCC
ATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATGTACGC
CGATGCCAAGGCCTTGTGACACAGGGAAAGATACTTGTAATAAGACAAGA
TCCAATTGCACAAACACTTTGACAGCTCCGGTTTACTACAACTGCTCGTG
TGGTGATGGTTATCTCAAATTCAACAACTCAGTTGATGATTGTCAAGACT
ACTGTCATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAG
GCAACTCCTCGTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTT
CGAGAGATTAGATTACAACACAGACAGTTGCACACCAATGCCAAGACCTT
GCGACACAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAAC
AGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTT
GAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGG
CTGATACCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAA
GGACGACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAA
CAACATGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAG
ATACTTGTAACAAGACAAGATCCAATTGCACAAACACTTTGACAGCTCCG
GTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACAACTC
CGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTGCAACA
AAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATTATGAA
TGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGACAGTTG
CACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAA
CTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGT
ACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCA
TGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTT
GTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACAT
GGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAG
ACCTTGTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCA
CAAACACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGT
TATCTCAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATAT
TGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTG
GTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTA
GATAACAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGG
GAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAG
CTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAAC
AGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTG
CAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACT
ACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGAC
AAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAA
CAAGACAAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTACTTCA
ACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACAACTCCGTTGATGAT
TGTCAAGACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACTTCAAC
GATGTGTGAGGCAACTCCTGGTAAAGGACGACATTATGAATGTCCATGTA
AATTTGGTTTCGAGAGATTAGATAACAACACAGACAGTTGCACACCAATG
CCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCATCCAA
CTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAG
CTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTATTGT
CGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATGTCTAC
TCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTTTGAGA
GACTCGACAACAACATGGACAAATGTACGCCGATGCCAAGACCTTGTGAC
ACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAACACTTT
GACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAAT
TCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGAT
TCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAGGACG
ACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACA
CAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACT
TGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTA
CTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGG
ATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACC
TCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCC
ATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGC
CGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAATAAAACTTCA
TCCAACTGTACAAACACCTTCGAAGCTCCTTTCTACTACAATTGTACCTG
TGAAGATGGTTATTTGAAGTTTAACAACTCCTTGGATCAATGTCATGAGT
ATTGTCGCATTGAGGCTGATACTTGCAACGATGTATCTACAACATGCTTG
TCTACTCCTGGCAAAGGGCGACATTACGAATGTCCTTGCAAAGATGGTTT
TGAAAGATTAGGAAATGACACGGACAGTTGTACACCGATTCCAAGACCTT
GTGACACGGGAGACGATACTTGCAACAAGACAACATCATCTTGTAACAAC
ACTCTTACAAATCCTTACCACAATTGTACTTGCAAGCCGGGGTATTTGAA
AGAAGGAAACTCAATCAACAAATGTTTAGATTTCTGTGCATCTGGTGATC
ACAACTGCAACCTTCAATCAACTGTGTGTCGACCAACACCAGGACAAGGG
TCACATTTCCAATGTGTTTGTAGAGACGGATATGAAGTTATTCCTGGTAA
TAAAACAACTTGTAAAAAGATTGTTGTCTCCTCGTCAATGATATTGCCAA
GCACTTCAGTGATCAGTCAATTAGCCACTCCTACGACCAGTTTTGTTGAG
CAGCCTGGCCCCCAAACAACTGTCGTGCAACTAACAGAAACAAAGACGAC
ACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGGAACTG
TAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTTCAGAG
ACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGC
AACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGC
AACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACTGAAGTTATT
CAGCCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAGCAAAGAC
AACACCGATAGTTGCTACAACCGAACTTGTCCAACCACCAGTGACACAGA
CTGAAGTCGTGCAACCGACAGAAACAAGGACAACACCAATAGTTGCTACA
ACTGAAGTTGTTCAGCCACCAGTGACACAGACAGAAGTCGTGCAACCGAC
AGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTTGTTCAGCCAC
CAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCG
ATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGT
CGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAG
TTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAGAAACA
AAGACAACACCAATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGAC
CCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTG
CTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGTGCAA
CCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACAAAGACAAC
ACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAG
AGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACT
GAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAGA
AACAAAGACAACACCGATAGTCGCTACAACTGAAGTTGTTCAGCCACCAG
TGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGATA
GTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGT
GCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACAAAGA
CAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAG
ACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTAC
AACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAGCCGA
CAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCCAATCA
CCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACAACACC
GATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025457XLOC_025457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041504-exon-sc0002895-1575043694:21537..22396TCONS_00041504-exon-sc0002895-1575043694:21537..22396Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1575043694:17126..18971TCONS_00041504-exon-sc0002895-1575043694:17126..18971Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1575043694:16457..16690TCONS_00041504-exon-sc0002895-1575043694:16457..16690Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1510915933:21537..22396TCONS_00041504-exon-sc0002895-1510915933:21537..22396Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1510915933:17126..18971TCONS_00041504-exon-sc0002895-1510915933:17126..18971Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1510915933:16457..16690TCONS_00041504-exon-sc0002895-1510915933:16457..16690Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1491911889:21537..22396TCONS_00041504-exon-sc0002895-1491911889:21537..22396Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1491911889:17126..18971TCONS_00041504-exon-sc0002895-1491911889:17126..18971Clytia hemisphaericaexon
TCONS_00041504-exon-sc0002895-1491911889:16457..16690TCONS_00041504-exon-sc0002895-1491911889:16457..16690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002895supercontigsc0002895:16457..22396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.794266	0	0	0	0	0	0	0	8.83747e-07	0	0	0	0	2.10098e-06	1.42131e-05	0.00598698	2.19624e-07	0.115749	0.0561896	0.555261	0.7185	3.42984e-09	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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