|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041501 ID=TCONS_00041501|Name=TCONS_00041501|organism=Clytia hemisphaerica|type=transcript|length=3429bp
CTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAAGATAT
ATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTGTAACT
GTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACTTTTGC
GTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTGGCGAC
ACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATTTGAGA
GACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTTGTGAT
ACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAACACTTT
GACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAAT
TCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGAT
TCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAAGGACG
ACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACA
CAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACT
TGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTA
CTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGG
ATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATACAACC
TCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGCCC
ATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATGTACGC
CGATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCA
TCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTG
TGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGT
ATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATG
TCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTT
TGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAGACCTT
GTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAAC
ACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCT
CAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAG
CTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAA
GGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAA
CAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAG
ATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCT
TTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTC
CTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATA
CAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAA
TGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGACAAATG
TACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAATAAAA
CTTCATCCAACTGTACAAACACCTTCGAAGCTCCTTTCTACTACAATTGT
ACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGGATCAATGTCA
TGAGTATTGTCGCATTGAGGCTGATACTTGCAACGATGTATCTACAACAT
GCTTGTCTACTCCTGGCAAAGGGCGACATTACGAATGTCCTTGCAAAGAT
GGTTTTGAAAGATTAGGAAATGACACGGACAGTTGTACACCGATTCCAAG
ACCTTGTGACACGGGAGACGATACTTGCAACAAGACAACATCATCTTGTA
ACAACACTCTTACAAATCCTTACCACAATTGTACTTGCAAGCCGGGGTAT
TTGAAAGAAGGAAACTCAATCAACAAATGTTTAGATTTCTGTGCATCTGG
TGATCACAACTGCAACCTTCAATCAACTGTGTGTCGACCAACACCAGGAC
AAGGGTCACATTTCCAATGTGTTTGTAGAGACGGATATGAAGTTATTCCT
GGTAATAAAACAACTTGTAAAAAGATTGTTGTCTCCTCGTCAATGATATT
GCCAAGCACTTCAGTGATCAGTCAATTAGCCACTCCTACGACCAGTTTTG
TTGAGCAGCCTGGCCCCCAAACAACTGTCGTGCAACTAACAGAAACAAAG
ACGACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGG
AACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTT
CAGAGACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCA
CCAGCAACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGT
CGTGCAACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACTGAAG
TTATTCAGCCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAGCA
AAGACAACACCGATAGTTGCTACAACCGAACTTGTCCAACCACCAGTGAC
ACAGACTGAAGTCGTGCAACCGACAGAAACAAGGACAACACCAATAGTTG
CTACAACTGAAGTTGTTCAGCCACCAGTGACACAGACAGAAGTCGTGCAA
CCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTTGTTCA
GCCACCAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAA
CACCGATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACA
GAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAAC
CGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAG
AAACAAAGACAACACCAATAGTTGCTACAACCAAAGTTGTTCAGCCACCA
GTGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGAT
AGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCG
TGCAACCTTCAGTTAGCCAGACAGAAGTCGTACAACCGACAGAAACAAAG
ACAACACCGATAGTTGCTACAACCGAAGTTGTCCAATCACCAGTGACACA
GACTGAAGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTA
CAACTGAAGTTGTTCAGCCACCAGTGACN Run BLAST on NCBI transcript from alignment at sc0002895:16457..22396- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041501 ID=TCONS_00041501|Name=TCONS_00041501|organism=Clytia hemisphaerica|type=transcript|length=5940bp|location=Sequence derived from alignment at sc0002895:16457..22396- (Clytia hemisphaerica)
CTAGCCGATACTCCATGTGCTTGGGGAAATGATACTTGTGATAAAGATAT
ATCAACATGTATCGATACTTACACGCATCCAAACTACTTTGACTGTAACT
GTTCAGCCGGATATGTCAAACAAAATCATACGACATGTTTCGACTTTTGC
GTTGATAACTCCGACACATGTAACGACACATCAACGACGTGTTTGGCGAC
ACCTGGTAAAGGGCGGCATTACGAATGTCCTTGTAAACATGGATTTGAGA
GACTCGATAACAACACGGACTCATGTACACCGATGCCAAGACCTTGTGAT
ACAGGGAAAGATACTTGTAACAAGACACGATCCAATTGCACAAACACTTT
GACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAAT
TCAACAACTCAGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGAT
TCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGCAAAGGACG
ACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACA
CAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACT
TGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTA
CTACAATTGTACCTGTGAAGATGGTTATTTGAAGTTTAACAACTCCTTGG
ATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACTTGCAATACAACC
TCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGCCC
ATGTAAACTTGGCTTTGAGAGACTCGATAACAACATGGACAAATGTACGC
CGATGCCAAGGCCTTGTGACACAGGGAAAGATACTTGTAATAAGACAAGA
TCCAATTGCACAAACACTTTGACAGCTCCGGTTTACTACAACTGCTCGTG
TGGTGATGGTTATCTCAAATTCAACAACTCAGTTGATGATTGTCAAGACT
ACTGTCATATTGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAG
GCAACTCCTCGTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTT
CGAGAGATTAGATTACAACACAGACAGTTGCACACCAATGCCAAGACCTT
GCGACACAGGGAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAAC
AGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTT
GAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGG
CTGATACCTGCAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAA
GGACGACACTACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAA
CAACATGGACAAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAG
ATACTTGTAACAAGACAAGATCCAATTGCACAAACACTTTGACAGCTCCG
GTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACAACTC
CGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGATTCCTGCAACA
AAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAGGACGACATTATGAA
TGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACACAGACAGTTG
CACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAA
CTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGT
ACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCA
TGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTT
GTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACAT
GGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGCCGATGCCAAG
ACCTTGTGACACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCA
CAAACACTTTGACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGT
TATCTCAAATTCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATAT
TGAAGCTGATTCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTG
GTAAAGGACGACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTA
GATAACAACACAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGG
GAAAGATACTTGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAG
CTCCTTTCTACTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAAC
AGCTCCTTGGATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTG
CAATACAACCTCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACT
ACGAATGTCCATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGAC
AAATGTACGCCGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAA
CAAGACAAGATCCAATTGCACAAACACTTTGACAGCTCCGGTTTACTTCA
ACTGCTCGTGTGGTGATGGTTATCTCAAATTCAACAACTCCGTTGATGAT
TGTCAAGACTACTGTCATATTGAAGCTGATTCCTGCAACAAAACTTCAAC
GATGTGTGAGGCAACTCCTGGTAAAGGACGACATTATGAATGTCCATGTA
AATTTGGTTTCGAGAGATTAGATAACAACACAGACAGTTGCACACCAATG
CCAAGACCTTGCGACACAGGGAAAGATACTTGCAATAAAACTTCATCCAA
CTGTACAAACAGCTTCGAAGCTCCTTTCTACTACAATTGTACCTGTGAAG
CTGGTTATTTGAAGTTTAACAGCTCCTTGGATCAATGTCATGAGTATTGT
CGTATTGAGGCTGATACCTGCAATACAACCTCTACAACTTGTATGTCTAC
TCCTGGCAAAGGACGACACTACGAATGTCCATGTAAACATGGCTTTGAGA
GACTCGACAACAACATGGACAAATGTACGCCGATGCCAAGACCTTGTGAC
ACAGGGAAAGATACTTGTAACAAGACAAGATCCAATTGCACAAACACTTT
GACAGCTCCGGTTTACTTCAACTGCTCGTGTGGTGATGGTTATCTCAAAT
TCAACAACTCCGTTGATGATTGTCAAGACTACTGTCATATTGAAGCTGAT
TCCTGCAACAAAACTTCAACGATGTGTGAGGCAACTCCTGGTAAAGGACG
ACATTATGAATGTCCATGTAAATTTGGTTTCGAGAGATTAGATAACAACA
CAGACAGTTGCACACCAATGCCAAGACCTTGCGACACAGGGAAAGATACT
TGCAATAAAACTTCATCCAACTGTACAAACAGCTTCGAAGCTCCTTTCTA
CTACAATTGTACCTGTGAAGCTGGTTATTTGAAGTTTAACAGCTCCTTGG
ATCAATGTCATGAGTATTGTCGTATTGAGGCTGATACCTGCAATACAACC
TCTACAACTTGTATGTCTACTCCTGGCAAAGGACGACACTACGAATGTCC
ATGTAAACATGGCTTTGAGAGACTCGACAACAACATGGACAAATGTACGC
CGATGCCAAGACCTTGTGACACAGGGAAAGATACTTGTAATAAAACTTCA
TCCAACTGTACAAACACCTTCGAAGCTCCTTTCTACTACAATTGTACCTG
TGAAGATGGTTATTTGAAGTTTAACAACTCCTTGGATCAATGTCATGAGT
ATTGTCGCATTGAGGCTGATACTTGCAACGATGTATCTACAACATGCTTG
TCTACTCCTGGCAAAGGGCGACATTACGAATGTCCTTGCAAAGATGGTTT
TGAAAGATTAGGAAATGACACGGACAGTTGTACACCGATTCCAAGACCTT
GTGACACGGGAGACGATACTTGCAACAAGACAACATCATCTTGTAACAAC
ACTCTTACAAATCCTTACCACAATTGTACTTGCAAGCCGGGGTATTTGAA
AGAAGGAAACTCAATCAACAAATGTTTAGATTTCTGTGCATCTGGTGATC
ACAACTGCAACCTTCAATCAACTGTGTGTCGACCAACACCAGGACAAGGG
TCACATTTCCAATGTGTTTGTAGAGACGGATATGAAGTTATTCCTGGTAA
TAAAACAACTTGTAAAAAGATTGTTGTCTCCTCGTCAATGATATTGCCAA
GCACTTCAGTGATCAGTCAATTAGCCACTCCTACGACCAGTTTTGTTGAG
CAGCCTGGCCCCCAAACAACTGTCGTGCAACTAACAGAAACAAAGACGAC
ACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGCAACCGGAACTG
TAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGCAACCTTCAGAG
ACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTTCAGCCACCAGC
AACCGGAACTGTAGTCGTACAACCTTCAGTCAGTCAGACAGAAGTCGTGC
AACCTTCAGAGACAAAGACAACACCGATAGTTGCTACAACTGAAGTTATT
CAGCCACCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAGCAAAGAC
AACACCGATAGTTGCTACAACCGAACTTGTCCAACCACCAGTGACACAGA
CTGAAGTCGTGCAACCGACAGAAACAAGGACAACACCAATAGTTGCTACA
ACTGAAGTTGTTCAGCCACCAGTGACACAGACAGAAGTCGTGCAACCGAC
AGAAACAAAGACAACACCGATAGTTGCTACAACCAAAGTTGTTCAGCCAC
CAGTGACCCAGACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCG
ATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGT
CGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAG
TTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAGAAACA
AAGACAACACCAATAGTTGCTACAACCAAAGTTGTTCAGCCACCAGTGAC
CCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTG
CTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGTGCAA
CCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACAAAGACAAC
ACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAGACAG
AGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTACAACT
GAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAACCGACAGA
AACAAAGACAACACCGATAGTCGCTACAACTGAAGTTGTTCAGCCACCAG
TGACCCAGACAGATGTCGTGCAACCGACAGAAACAAAGACAACACCGATA
GTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAGGTCGT
GCAACCTTCAGTTAGCCAGACAGAAGTCGTACAAGCGACAGAAACAAAGA
CAACACCGATAGTCGCTACAACCAAAGTTGTTCAGCCACCAGTGACCCAG
ACAGAGGTCGTGCAACCGACAGAAACAAAGACAACACCGATAGTTGCTAC
AACTGAAGTTGTTCAGCCACCAGTGACCCAGACAGAAGTCGTGCAGCCGA
CAGAAACAAAGACAACACCGATAGTTGCTACAACCGAAGTTGTCCAATCA
CCAGTGACACAGACTGAAGTCGTGCAACCGACAGAAACAAAGACAACACC
GATAGTTGCTACAACTGAAGTTGTTCAGCCACCAGTGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041501-exon-sc0002895-1575043694:21537..22396 | TCONS_00041501-exon-sc0002895-1575043694:21537..22396 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1575043694:17117..19541 | TCONS_00041501-exon-sc0002895-1575043694:17117..19541 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1575043694:16457..16600 | TCONS_00041501-exon-sc0002895-1575043694:16457..16600 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1510915933:21537..22396 | TCONS_00041501-exon-sc0002895-1510915933:21537..22396 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1510915933:17117..19541 | TCONS_00041501-exon-sc0002895-1510915933:17117..19541 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1510915933:16457..16600 | TCONS_00041501-exon-sc0002895-1510915933:16457..16600 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1491911889:21537..22396 | TCONS_00041501-exon-sc0002895-1491911889:21537..22396 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1491911889:17117..19541 | TCONS_00041501-exon-sc0002895-1491911889:17117..19541 | Clytia hemisphaerica | exon |
| TCONS_00041501-exon-sc0002895-1491911889:16457..16600 | TCONS_00041501-exon-sc0002895-1491911889:16457..16600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002895 | supercontig | sc0002895:16457..22396 - |
Blast
The following BLAST results are available for this feature:
|
