TCONS_00041493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041493
Unique NameTCONS_00041493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041493 ID=TCONS_00041493|Name=TCONS_00041493|organism=Clytia hemisphaerica|type=transcript|length=539bp
GGAATTATAAAAGTTGTTTAAGGTCTTTTCGTCTCGATTAGCAAATCTGA
ctatttagattttttgttttcctaTTTGAGTCAGCGAGACAAAATACGTA
ATCTCAACAGGgcgcaaaatgtaaacaaagctctactttcatttttatag
acAAGTTTGTGGAGGAATTTCCATCTTGTCAGCCTTTCTATTACTTTTAA
AAAGTAATCTGTTCTTCTGTTCTACTCGTTCACTGAAAAAGTTGTTCATC
TAGTTATTTATAATTTGCAAGATGGAAGAAGTTTTCAAATCGTTTTGTTC
TTTTGGAGCCGGAAAAGATGGAGCAGCTCTCATGGATAATTCCAAATTTG
CAAAACTTGCACGAGATTTAAAACTTTTGGATAAAAAGCTCACTGCAACA
GATGTTGATATTATTTTCAATCGAACTGAAGTTAAACCGTATGTAtttac
agtcaggcacatcctggcaaatgaacggggtatttttcacttgcgaccat
tggcaaatgaacggggtcgaaaacaaaagtgacgtAATA
Run BLAST on NCBI

transcript from alignment at sc0002894:6250..6788

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041493 ID=TCONS_00041493|Name=TCONS_00041493|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0002894:6250..6788 (Clytia hemisphaerica)
TATTacgtcacttttgttttcgaccccgttcatttgccaatggtcgcaag
tgaaaaataccccgttcatttgccaggatgtgcctgactgtaaaTACATA
CGGTTTAACTTCAGTTCGATTGAAAATAATATCAACATCTGTTGCAGTGA
GCTTTTTATCCAAAAGTTTTAAATCTCGTGCAAGTTTTGCAAATTTGGAA
TTATCCATGAGAGCTGCTCCATCTTTTCCGGCTCCAAAAGAACAAAACGA
TTTGAAAACTTCTTCCATCTTGCAAATTATAAATAACTAGATGAACAACT
TTTTCAGTGAACGAGTAGAACAGAAGAACAGATTACTTTTTAAAAGTAAT
AGAAAGGCTGACAAGATGGAAATTCCTCCACAAACTTgtctataaaaatg
aaagtagagctttgtttacattttgcgcCCTGTTGAGATTACGTATTTTG
TCTCGCTGACTCAAAtaggaaaacaaaaaatctaaatagTCAGATTTGCT
AATCGAGACGAAAAGACCTTAAACAACTTTTATAATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025455XLOC_025455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041493-exon-sc0002894-1491911889:6250..6788TCONS_00041493-exon-sc0002894-1491911889:6250..6788Clytia hemisphaericaexon
TCONS_00041493-exon-sc0002894-1510915933:6250..6788TCONS_00041493-exon-sc0002894-1510915933:6250..6788Clytia hemisphaericaexon
TCONS_00041493-exon-sc0002894-1575043694:6250..6788TCONS_00041493-exon-sc0002894-1575043694:6250..6788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002894supercontigsc0002894:6250..6788 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.53086	8.84971	22.5182	28.1052	36.6871	33.1187	38.7219	52.4896	83.6759	84.2754	61.4139	68.8905	18.7517	20.691	18.892	20.7874	19.1793	19.6835	34.4784	38.9653	35.9306	35.9454	18.9958	23.1511	3.79067	7.59375	40.3167	35.9059	11.0309	14.861
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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