TCONS_00041491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041491
Unique NameTCONS_00041491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041491 ID=TCONS_00041491|Name=TCONS_00041491|organism=Clytia hemisphaerica|type=transcript|length=1029bp
TTTTATCTTAGTGGTTGTGCACCAATGCACTTCTGAACTATTGTTTATTT
ACTATTTCCATGCCGAAACTTTAAGGCGAAAGTGAATATTGTTAGGGTTA
CAATGTTCAATTGACCCGCTAAGATGTTGTTATTTATTATCTATTACCTC
TTATTGCCTTGTTCTTATCTTTGTTATATAGGTGTACAAGGGTTATGTGG
ACGACCCTCGAAATACAGACAATGCATGGATGGAAACTGTAGCCTGTAAT
TTCCATGATGACACTGGTGAAGTCTTTGGTGAATTCCAATTAAATGCTGG
TGACGACGCCCAAGCAGTTCGTTGGCAACGCGTTAGTGGAAACATACCCT
TATTTGCAAGCCACGTTGGCATACTCGAGCAAGTCGCTAACATGCATAAC
GCTGCTTTCTATTGATTTTGGATGAAATGGATGATTGTATCACAAAGTCA
AGGGGGGGGAGACAAAGTATCCCCTCCCCCAGGACCCAGGACTAAAGTCT
GTCttaaaataatttgcagcttaaacttttgatagaattcgaaaaaaaat
gaaaaatgcatGGTGGGTAATATAGTTTTTGTGGTAGTTATCATTTGGGT
CATTTGGCAATGAATTAATGGAATGGTTTCgattttggaactaattttcg
cgggttttaattttcgcggttttgcccttttttggacaaatttccttcat
tttcctagggatttttcaaatttttcgataaaattggaaaaatattgtat
ttcgcgggaattaattttcgcggtatttagctctcaaaatttttcgcgtg
atcaaattttcgcgattttgacgaaaaaccgcgaaaaacgctaaaattaa
aacccgcgaaaattagttccaataacgTAGACGTTTTATTGTCTGGAAAG
TTTATACATATTCTAcatattaaaaatttaattcttaCAGGTGGATTTTA
ATCATAGATTTTTTCAACTAATTCTAATGCACTTTAATTTATCGCAATTT
TATGCACCTTTTAATACACGAGTGaaatt
Run BLAST on NCBI

transcript from alignment at sc0002894:3571..5303-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041491 ID=TCONS_00041491|Name=TCONS_00041491|organism=Clytia hemisphaerica|type=transcript|length=1733bp|location=Sequence derived from alignment at sc0002894:3571..5303- (Clytia hemisphaerica)
TTTTATCTTAGTGGTTGTGCACCAATGCACTTCTGAACTATTGTTTATTT
ACTATTTCCATGCCGAAACTTTAAGGCGAAAGTGAATATTGTTAGGGTTA
CAATGTTCAATTGACCCGCTAAGATGTTGTTATTTATTATCTATTACCTC
TTATTGCCTTGTTCTTATCTTTGTTATATAGGTGTACAAGGGTTATGTGG
ACGACCCTCGAAATACAGACAATGCATGGATGGAAACTGTAGCCTGTAAT
TTCCATGATGACACTGGTGAAGTCTTTGGTGAATTCCAATTAAATGTAGG
TGAAATATTTAAGTGTTCTAAACAGAATCCAAACACCAAGAGCGTGTATT
GAGGAATCTTCTTGCTTATACAGTTGTAACATCTTCACTCTATCCCCTCA
ACTGATGGATTTTCAATAAATGCTTATCGATTGTCACTCTATGATTTTGC
CTTTTTTGAAGGCTTTTCTTTTTTCTACATTTCTAAATTTTCCTATCTTA
AATCAAAGACCCCACCATAGCATTCAAACTCTTTAACCAATGCAGCGAAT
GCACACGGCGATCTTTGATTGGATTAATCGGATTCAAATTTCCGTGTTAT
AGCCAAATTTTAGGAAATTAACTGAGAAGAAATGCTTTATTTTTCTTTTA
TCCTTTAGAGGACAACTATAAGTACATTCTGTGAAAATTTCAAGTCTCTA
GCAATTTCCTATCCGGAATTATCTTGATTCCGATTTAGAGCGATCTCAAC
CGGGATGAGAACGGGATAGAGGGATCTCTCGAAAACGAAAGTGCCCAATA
ACTGGTGAACAGTTTGATGTATCAAAAAACTTTTTTGCCTACTTTTACAT
TGCTATAAGGACACATTTCATCTTCTCATGAGCTCTACTTAAGGAGATAC
AAGGGATATTAGCCAAAATAATCCCGATTTTACAAAAGTTCCAATGAAAG
ATCACTGTGGCAGTTGAAAATGAAGATAAAATGCAAATCTTTTCAATAGG
CTGGTGACGACGCCCAAGCAGTTCGTTGGCAACGCGTTAGTGGAAACATA
CCCTTATTTGCAAGCCACGTTGGCATACTCGAGCAAGTCGCTAACATGCA
TAACGCTGCTTTCTATTGATTTTGGATGAAATGGATGATTGTATCACAAA
GTCAAGGGGGGGGAGACAAAGTATCCCCTCCCCCAGGACCCAGGACTAAA
GTCTGTCTTAAAATAATTTGCAGCTTAAACTTTTGATAGAATTCGAAAAA
AAATGAAAAATGCATGGTGGGTAATATAGTTTTTGTGGTAGTTATCATTT
GGGTCATTTGGCAATGAATTAATGGAATGGTTTCGATTTTGGAACTAATT
TTCGCGGGTTTTAATTTTCGCGGTTTTGCCCTTTTTTGGACAAATTTCCT
TCATTTTCCTAGGGATTTTTCAAATTTTTCGATAAAATTGGAAAAATATT
GTATTTCGCGGGAATTAATTTTCGCGGTATTTAGCTCTCAAAATTTTTCG
CGTGATCAAATTTTCGCGATTTTGACGAAAAACCGCGAAAAACGCTAAAA
TTAAAACCCGCGAAAATTAGTTCCAATAACGTAGACGTTTTATTGTCTGG
AAAGTTTATACATATTCTACATATTAAAAATTTAATTCTTACAGGTGGAT
TTTAATCATAGATTTTTTCAACTAATTCTAATGCACTTTAATTTATCGCA
ATTTTATGCACCTTTTAATACACGAGTGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025453XLOC_025453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041491-exon-sc0002894-1575043694:5009..5303TCONS_00041491-exon-sc0002894-1575043694:5009..5303Clytia hemisphaericaexon
TCONS_00041491-exon-sc0002894-1575043694:3571..4304TCONS_00041491-exon-sc0002894-1575043694:3571..4304Clytia hemisphaericaexon
TCONS_00041491-exon-sc0002894-1510915933:5009..5303TCONS_00041491-exon-sc0002894-1510915933:5009..5303Clytia hemisphaericaexon
TCONS_00041491-exon-sc0002894-1510915933:3571..4304TCONS_00041491-exon-sc0002894-1510915933:3571..4304Clytia hemisphaericaexon
TCONS_00041491-exon-sc0002894-1491911889:5009..5303TCONS_00041491-exon-sc0002894-1491911889:5009..5303Clytia hemisphaericaexon
TCONS_00041491-exon-sc0002894-1491911889:3571..4304TCONS_00041491-exon-sc0002894-1491911889:3571..4304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002894supercontigsc0002894:3571..5303 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21442	1.21546	0.748135	0.267936	5.65505	2.61462	2.6955	3.3687	2.04815	1.96519	1.43619	2.43585	0.848746	1.12117	0.487633	0.612983	0.556973	0.465448	1.43994	0.89521	1.40419	1.68361	1.33844	1.02227	1.16828	1.69646	1.59787	0.887825	0.487668	0.746985
Blast
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BLAST of TCONS_00041491 vs. Swiss-Prot (Human)
Match: NUDT9 (ADP-ribose pyrophosphatase, mitochondrial OS=Homo sapiens GN=NUDT9 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.236e-20
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  182 VYKGYVDDPRNTDNAWMETVACNFHDDTGEVFGEFQLNAGDDAQAVRWQRVSGNIPLFASHVGILEQVANMHNA 403
            +YKGYVDDPRNTDNAWMET A N+HD+TGE+     L AGDDA  V+W  ++  + L+ASH   ++ VA   +A
Sbjct:  264 IYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDA 337
The following BLAST results are available for this feature:
BLAST of TCONS_00041491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUDT91.236e-2054.05ADP-ribose pyrophosphatase, mitochondrial OS=Homo ... [more]
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