TCONS_00041488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041488
Unique NameTCONS_00041488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041488 ID=TCONS_00041488|Name=TCONS_00041488|organism=Clytia hemisphaerica|type=transcript|length=410bp
TCAGATTTATCAAGCGGCAATAAATCAAGTCGACCAACATTCAATGGACA
TCAAATATTCCACCttgaaaaaacatttgaaacaacTAAATATTTAGCTG
GTCCTGAAAGAGGTCGACTAGCCAAAGCTTTAAGGATGTCCGAAAATCAG
GTTAAAGTATGGTTCCAAAACCGTCGGACAAAATGGCGGAAAAAATTATC
TCGTGATACGACAAGGTGTGAACCCATTGAAAGTCTTTTGGAGGATCCGT
CAAGTCTTTTGAGTTATCAACGTATACATCATTtatgaattaaaattttt
caattcagattttcagtttttcaggtACATATAAtttccaaatttgaatt
ttgaatttaaattccATTTCCAGACAGTATTACAACAGCCGATTTTATGT
AACTTAGCTA
Run BLAST on NCBI

transcript from alignment at sc0002892:7278..7687

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041488 ID=TCONS_00041488|Name=TCONS_00041488|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at sc0002892:7278..7687 (Clytia hemisphaerica)
TAGCTAAGTTACATAAAATCGGCTGTTGTAATACTGTCTGGAAATggaat
ttaaattcaaaattcaaatttggaaaTTATATGTacctgaaaaactgaaa
atctgaattgaaaaattttaattcataAATGATGTATACGTTGATAACTC
AAAAGACTTGACGGATCCTCCAAAAGACTTTCAATGGGTTCACACCTTGT
CGTATCACGAGATAATTTTTTCCGCCATTTTGTCCGACGGTTTTGGAACC
ATACTTTAACCTGATTTTCGGACATCCTTAAAGCTTTGGCTAGTCGACCT
CTTTCAGGACCAGCTAAATATTTAgttgtttcaaatgttttttcaaGGTG
GAATATTTGATGTCCATTGAATGTTGGTCGACTTGATTTATTGCCGCTTG
ATAAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025450XLOC_025450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041488-exon-sc0002892-1491911889:7278..7687TCONS_00041488-exon-sc0002892-1491911889:7278..7687Clytia hemisphaericaexon
TCONS_00041488-exon-sc0002892-1510915933:7278..7687TCONS_00041488-exon-sc0002892-1510915933:7278..7687Clytia hemisphaericaexon
TCONS_00041488-exon-sc0002892-1575043694:7278..7687TCONS_00041488-exon-sc0002892-1575043694:7278..7687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002892supercontigsc0002892:7278..7687 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.117552	5.47071	5.36493	0.100226	0.215116	2.81096	1.36658	7.4862	9.57046	0.902868	2.27517	3.79331	2.59924	2.81024	1.25343	0	0	6.68047	10.196
Blast
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BLAST of TCONS_00041488 vs. Swiss-Prot (Human)
Match: NKX63 (Homeobox protein Nkx-6.3 OS=Homo sapiens GN=NKX6-3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.358e-26
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   22 KSSRPTFNGHQIFHLEKTFETTKYLAGPERGRLAKALRMSENQVKVWFQNRRTKWRKK 195
            K +RPTF GHQIF LEKTFE TKYLAGPER RLA +L M+E+QVKVWFQNRRTKWRKK
Sbjct:  140 KHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 197
The following BLAST results are available for this feature:
BLAST of TCONS_00041488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX631.358e-2681.03Homeobox protein Nkx-6.3 OS=Homo sapiens GN=NKX6-3... [more]
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