TCONS_00041486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041486
Unique NameTCONS_00041486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041486 ID=TCONS_00041486|Name=TCONS_00041486|organism=Clytia hemisphaerica|type=transcript|length=440bp
gCTGGACAGAAAGTGGGAGATCCTCATGGAAAGTGAACGAAGATTCGTCA
ACCCATGTTCCCTCAGAGACATGACTTCGACAGAATTGCTAATATACTCT
GACGAGATTGCTTTTATTTTGGGAGAGGTCAGAGAGGAATGCAAGAGATC
AAGGAAATTTGGTATGATCTAATCGAATTAACTAGCATCGCAACCTCGAG
AAGATACGCCATCGATAATGACTTCTGTATAATGTAAGCAAGTACAGTTT
TAGTTTAACTTGCGTTGTTTCTTATTTGTTCATATATATATACAACCATA
GAGTTTGATAATTacgccaaaaacatttttttttctttattgaaacaaag
acacgtgtacactacgaacatatattacaaaacattacttaaacataaaa
tatagtccctccccccgctaggaactaacgttatatcgcc
Run BLAST on NCBI

transcript from alignment at sc0002891:8852..9291

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041486 ID=TCONS_00041486|Name=TCONS_00041486|organism=Clytia hemisphaerica|type=transcript|length=440bp|location=Sequence derived from alignment at sc0002891:8852..9291 (Clytia hemisphaerica)
ggcgatataacgttagttcctagcggggggagggactatattttatgttt
aagtaatgttttgtaatatatgttcgtagtgtacacgtgtctttgtttca
ataaagaaaaaaaaatgtttttggcgtAATTATCAAACTCTATGGTTGTA
TATATATATGAACAAATAAGAAACAACGCAAGTTAAACTAAAACTGTACT
TGCTTACATTATACAGAAGTCATTATCGATGGCGTATCTTCTCGAGGTTG
CGATGCTAGTTAATTCGATTAGATCATACCAAATTTCCTTGATCTCTTGC
ATTCCTCTCTGACCTCTCCCAAAATAAAAGCAATCTCGTCAGAGTATATT
AGCAATTCTGTCGAAGTCATGTCTCTGAGGGAACATGGGTTGACGAATCT
TCGTTCACTTTCCATGAGGATCTCCCACTTTCTGTCCAGc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025448XLOC_025448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041486-exon-sc0002891-1491911889:8852..9291TCONS_00041486-exon-sc0002891-1491911889:8852..9291Clytia hemisphaericaexon
TCONS_00041486-exon-sc0002891-1510915933:8852..9291TCONS_00041486-exon-sc0002891-1510915933:8852..9291Clytia hemisphaericaexon
TCONS_00041486-exon-sc0002891-1575043694:8852..9291TCONS_00041486-exon-sc0002891-1575043694:8852..9291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002891supercontigsc0002891:8852..9291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177033	1.02524	0.191582	0	0	0	0.435846	0.393581	0.148352	0.912353	0	0.141345	0.129364	0.50113	0.0957838	0.802599	0.571831	0.505254	0.595139	0	0	0	0.200387	1.12048	0.365041	0.166486	0.241595	0	0.182704	0.180086
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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