TCONS_00041479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041479
Unique NameTCONS_00041479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041479 ID=TCONS_00041479|Name=TCONS_00041479|organism=Clytia hemisphaerica|type=transcript|length=422bp
cgatacttgacatgaaaaatatctgctgAGATTCTTTTTCCCTCAACAGA
TTGATAACAGAAGCTTGGTTCACCAAAAATCTTACCTACACAAGTAACAC
AAGTAAGTAATATAGTTTTTAAATAGTCAATGCGCAGGTAAAACGGAGGA
ACCCAGAAATTTtccagtttgcagagtgtggCACGTTTGATGGAGATCGA
GTGCACAACTCGGAAAAAGTAAAGTGTAGGTgcaaaattttgaagttttc
aggTGCAAGTTCAGACTTGCAGCAGAGTTTCAGCTATTTTTTCCTCAAGC
TCAAGTGCAGGCGTATAATAttataaattctttttttgcctttttgggcG
AATTTTCGAGGTATAGGTGCACCTTGTctggaccaaaatttatcaggtgt
GTTATTCCAGTGCACAGAACTT
Run BLAST on NCBI

transcript from alignment at sc0002887:5731..6152

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041479 ID=TCONS_00041479|Name=TCONS_00041479|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0002887:5731..6152 (Clytia hemisphaerica)
AAGTTCTGTGCACTGGAATAACacacctgataaattttggtccagACAAG
GTGCACCTATACCTCGAAAATTCgcccaaaaaggcaaaaaaagaatttat
aaTATTATACGCCTGCACTTGAGCTTGAGGAAAAAATAGCTGAAACTCTG
CTGCAAGTCTGAACTTGCAcctgaaaacttcaaaattttgcACCTACACT
TTACTTTTTCCGAGTTGTGCACTCGATCTCCATCAAACGTGccacactct
gcaaactggaAAATTTCTGGGTTCCTCCGTTTTACCTGCGCATTGACTAT
TTAAAAACTATATTACTTACTTGTGTTACTTGTGTAGGTAAGATTTTTGG
TGAACCAAGCTTCTGTTATCAATCTGTTGAGGGAAAAAGAATCTcagcag
atatttttcatgtcaagtatcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025442XLOC_025442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041479-exon-sc0002887-1491911889:5731..6152TCONS_00041479-exon-sc0002887-1491911889:5731..6152Clytia hemisphaericaexon
TCONS_00041479-exon-sc0002887-1510915933:5731..6152TCONS_00041479-exon-sc0002887-1510915933:5731..6152Clytia hemisphaericaexon
TCONS_00041479-exon-sc0002887-1575043694:5731..6152TCONS_00041479-exon-sc0002887-1575043694:5731..6152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002887supercontigsc0002887:5731..6152 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.649697	1.32013	1.29154	2.02157	0.709986	0.642426	0.601431	0.701794	0.869285	0	0.443718	1.88318	0.345124	0.283739	0.202997	0.250075	0.640798	0.354119	0.555839	0.644167	0.471303	0	0.173626	0.536491	1.11721	0.685169	0.243744	0.369742	0.565063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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