TCONS_00041478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041478
Unique NameTCONS_00041478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041478 ID=TCONS_00041478|Name=TCONS_00041478|organism=Clytia hemisphaerica|type=transcript|length=810bp
GTTCACGATACGTAATTTTTTATCTTATAGCAAGCCCTTAGTCTTTTTGT
AGATGGTGACTTTCTTTCTTCGGCACTGATGATGTTTTTAAATTACTTTA
CATAAATCTTAATATAGTTTGACGTTTGATTATTCTTCACTATGACGACA
TGACGATTTTGACAGTTGACGTTTACAATTATTTCACGGTAAGCATAAGA
CTTGACTCGTACATCCAAGAGTTTCTGGGTTATTTGACTGAAATATACGA
TGCTGTTCTATGAGAGATAAAGATGGAGATGAAAAGACAGGGAAACTTTG
AAGTACTTTTTGAAACTCTGTTTTAAAATGCATGTGCTAAACATTTGCTA
AACTCGATTTTCCTCCGAAATGGTACATAATAACAAAGAAACTGCCAAAA
TTTGTTTTCTGACCCGTACTTAGTCAAAGTCCCTAACTAAGATATTTGAA
CTTACGCCATttaaacacccctttctcacagaacTGTTTAATATTCTCAT
CGTACATCGTTTACATTATAATATTCTGTTCTGTTTCTGAAACACCATGA
TCTGGGTTGGGTGTGTTTTATTTTTAATGTTTTCCTTATTTAATGAAAAA
GAAAACAAACGTTATTCATAAAAAACAATATGTTGTTGCTTGATTTCTTG
TCCTTTACCACTTCCCTTCCCGTTGATTAAAATTGCCTTTACTGTTAGTT
CACCGATTAAAACAACCATATGAAGATATTAGTTTGAGAAGTTTTTCCTC
GCCGAGAATAAGATCCCTGAATTACgtactttttttaataagaatagttT
TTTGGCTGAG
Run BLAST on NCBI

transcript from alignment at sc0002887:11210..12019-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041478 ID=TCONS_00041478|Name=TCONS_00041478|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at sc0002887:11210..12019- (Clytia hemisphaerica)
GTTCACGATACGTAATTTTTTATCTTATAGCAAGCCCTTAGTCTTTTTGT
AGATGGTGACTTTCTTTCTTCGGCACTGATGATGTTTTTAAATTACTTTA
CATAAATCTTAATATAGTTTGACGTTTGATTATTCTTCACTATGACGACA
TGACGATTTTGACAGTTGACGTTTACAATTATTTCACGGTAAGCATAAGA
CTTGACTCGTACATCCAAGAGTTTCTGGGTTATTTGACTGAAATATACGA
TGCTGTTCTATGAGAGATAAAGATGGAGATGAAAAGACAGGGAAACTTTG
AAGTACTTTTTGAAACTCTGTTTTAAAATGCATGTGCTAAACATTTGCTA
AACTCGATTTTCCTCCGAAATGGTACATAATAACAAAGAAACTGCCAAAA
TTTGTTTTCTGACCCGTACTTAGTCAAAGTCCCTAACTAAGATATTTGAA
CTTACGCCATTTAAACACCCCTTTCTCACAGAACTGTTTAATATTCTCAT
CGTACATCGTTTACATTATAATATTCTGTTCTGTTTCTGAAACACCATGA
TCTGGGTTGGGTGTGTTTTATTTTTAATGTTTTCCTTATTTAATGAAAAA
GAAAACAAACGTTATTCATAAAAAACAATATGTTGTTGCTTGATTTCTTG
TCCTTTACCACTTCCCTTCCCGTTGATTAAAATTGCCTTTACTGTTAGTT
CACCGATTAAAACAACCATATGAAGATATTAGTTTGAGAAGTTTTTCCTC
GCCGAGAATAAGATCCCTGAATTACGTACTTTTTTTAATAAGAATAGTTT
TTTGGCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025441XLOC_025441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041478-exon-sc0002887-1575043694:11210..12019TCONS_00041478-exon-sc0002887-1575043694:11210..12019Clytia hemisphaericaexon
TCONS_00041478-exon-sc0002887-1510915933:11210..12019TCONS_00041478-exon-sc0002887-1510915933:11210..12019Clytia hemisphaericaexon
TCONS_00041478-exon-sc0002887-1491911889:11210..12019TCONS_00041478-exon-sc0002887-1491911889:11210..12019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002887supercontigsc0002887:11210..12019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395374	0.106914	0.694249	0.535536	0.624685	0.913248	1.34936	1.14285	0.363608	0.766219	0	0.514151	0.729573	1.31001	0.259719	0.353978	0.16289	0.322099	0	0	0.440085	0.730531	0.491763	0.542044	0.31013	0.712824	1.01066	1.24327	1.06009	1.99619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top