TCONS_00041477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041477
Unique NameTCONS_00041477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041477 ID=TCONS_00041477|Name=TCONS_00041477|organism=Clytia hemisphaerica|type=transcript|length=524bp
ATGTTCACGATACGTAATTTTTTATCTTATAGCAAGCCCTTAGTCTTTTT
GTAGATGGTGACTTTCTTTCTTCGGCACTGATGATGTTTTTAAATTACTT
TACATAAATCTTAATATAGTTTGACGTTTGATTATTCTTCACTATGACGA
CATGACGATTTTGACAGTTGACGTTTACAATTATTTCACGGTTATGGTAT
ACTCAAGAAATGCTGGACCATCGAGAAAGTTTGGGGGAAAAATTGCGAGA
ATACAAGCTCTCAGCGCTCGGAAAAGATATggagaaaaatctcaaaatat
ttgatcGGGTGGCAGAAAGCTCCTTGGATTTCAGGGAGCAATTAGAAATG
ATATGCAGCATTCCTAATTTTTACAAGTGGCTTTGGACTCTTGACGACCC
CTCGAAGCAACAAGtcaaatttgagcaaaaatttcCTCATCGACACGCTA
TCTGCCTGGTTCACCTAGGAATAGAATCGTTCACGCTGTCGCACTGAATG
GAAGTGAGCACGATGTCATCACNN
Run BLAST on NCBI

transcript from alignment at sc0002887:9478..12021-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041477 ID=TCONS_00041477|Name=TCONS_00041477|organism=Clytia hemisphaerica|type=transcript|length=2544bp|location=Sequence derived from alignment at sc0002887:9478..12021- (Clytia hemisphaerica)
ATGTTCACGATACGTAATTTTTTATCTTATAGCAAGCCCTTAGTCTTTTT
GTAGATGGTGACTTTCTTTCTTCGGCACTGATGATGTTTTTAAATTACTT
TACATAAATCTTAATATAGTTTGACGTTTGATTATTCTTCACTATGACGA
CATGACGATTTTGACAGTTGACGTTTACAATTATTTCACGGTAAGCATAA
GACTTGACTCGTACATCCAAGAGTTTCTGGGTTATTTGACTGAAATATAC
GATGCTGTTCTATGAGAGATAAAGATGGAGATGAAAAGACAGGGAAACTT
TGAAGTACTTTTTGAAACTCTGTTTTAAAATGCATGTGCTAAACATTTGC
TAAACTCGATTTTCCTCCGAAATGGTACATAATAACAAAGAAACTGCCAA
AATTTGTTTTCTGACCCGTACTTAGTCAAAGTCCCTAACTAAGATATTTG
AACTTACGCCATTTAAACACCCCTTTCTCACAGAACTGTTTAATATTCTC
ATCGTACATCGTTTACATTATAATATTCTGTTCTGTTTCTGAAACACCAT
GATCTGGGTTGGGTGTGTTTTATTTTTAATGTTTTCCTTATTTAATGAAA
AAGAAAACAAACGTTATTCATAAAAAACAATATGTTGTTGCTTGATTTCT
TGTCCTTTACCACTTCCCTTCCCGTTGATTAAAATTGCCTTTACTGTTAG
TTCACCGATTAAAACAACCATATGAAGATATTAGTTTGAGAAGTTTTTCC
TCGCCGAGAATAAGATCCCTGAATTACGTACTTTTTTTAATAAGAATAGT
TTTTTGGCTGAGGGTTGATTGAATAGAAAACGACTGTATCCTCATCAAAA
ATCTGTGAAACTCACCCTGGAGGATATTCATTGGGGTATTCTTACGAATA
CTTTAGCCTTGCCACACAACCACAGCGTTTTTTGCGCAGTGAATCAAATA
AGAAATTGATTTTAGCGGACTTTATTATAATATTCTGTCGCCTTGATTTC
GGTCAAAACCTAAGAACAATCTGATCCTCAGAGTTTAGAAGTTTATTCTA
AGAAAGTACTGATTTTAACAGATTTTAAACCCATTCTAAGTTTAAGTAGA
GAAACTGAGCGTGGTCATTTGAGCTCGGATTCCGAAACATTTCTGTTCAA
AGTTGGGTAAATGGGATTTTACTTTGAGTCTTATTCGATCGTAGTCATTT
GAGCTCGGATTCCGAGACATTTCTGTTCAAAGTAGGTAAATGGGATTTTT
CTTTGAGTCTTATTCGATCGTAGTCATTTGAGCTCGGATTCCGAGACANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGATTTTTCTTTG
AGTCTTATTCGATCGTAGTCATTTGAGCTCGGATTCCGAGACATTTCTGT
TCAAAGTTGGGTAAATGGGATTTTTTTGTGAGTCTTATTCGATTCGATCG
TAGTCATTTGAGTTCGGATTCTATGGAGTTAGATCGAGGTCAAAATCGTT
GGACCGGATCGACCACCGGTCCAACGATCGAGTGAACGGTTCCACCACCG
GTTCAACGATTTTGAGCTATCGATCTAACTCCATAGGATTCCGAGACATT
TCTGTTCAAAGTAGCATTGCTTTTTTCGAATTTCGTAAATTTTGTTCTAA
TATCGTGATCATTTAAGACGCTGTGAAAGAGAGATTCAGTGGACTTGCAG
TGCGTAGAAAAAAAATATGACGAAAATCTTCCATAATTCTTTTTTCTGTA
GTCATGATTGGGATAGAATTTCTCCATCCAAACCGTTCGTTCTATCAAAT
GGATGATCCGGCGCAAGTTTAGTCTAAGTCTTCCTTCTGCATCATGGACC
TTTTCTAAAACGTAATTTTTGAGATGGGGAAAAATAACGGGATTTCCACG
AGAGTCAACGCCTCCCAACTTTTGCTATTTTGTTCTTTGATAAACATCGT
ATCCTACATCCTAGGACTATCATGGACCTTTTCTAAAATGTAATTTTTGA
GATAGGGGAAAATTTGACGGGAGCTGAGCTTCCGCGAGCTGAGATTAATT
AAGGGATTTATTAATCTCTACTTTTTAGGTTATGGTATACTCAAGAAATG
CTGGACCATCGAGNATAAAATGTAATTTTTGAGATAGGGGAAAATTTGAC
GGGAGCTGAGCTTCCGCGAGCTGAAATTGATTAAGGGATTTATTCATCTC
TACTTTTTAGGTTATGGTATACTCAAGAAATGCTGGACCATCGAGAAAGT
TTGGGGGAAAAATTGCGAGAATACAAGCTCTCAGCGCTCGGAAAAGATAT
GGAGAAAAATCTCAAAATATTTGATCGGGTGGCAGAAAGCTCCTTGGATT
TCAGGGAGCAATTAGAAATGATATGCAGCATTCCTAATTTTTACAAGTGG
CTTTGGACTCTTGACGACCCCTCGAAGCAACAAGTCAAATTTGAGCAAAA
ATTTCCTCATCGACACGCTATCTGCCTGGTTCACCTAGGAATAGAATCGT
TCACGCTGTCGCACTGAATGGAAGTGAGCACGATGTCATCACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025441XLOC_025441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041477-exon-sc0002887-1575043694:11832..12021TCONS_00041477-exon-sc0002887-1575043694:11832..12021Clytia hemisphaericaexon
TCONS_00041477-exon-sc0002887-1575043694:9478..9811TCONS_00041477-exon-sc0002887-1575043694:9478..9811Clytia hemisphaericaexon
TCONS_00041477-exon-sc0002887-1510915933:11832..12021TCONS_00041477-exon-sc0002887-1510915933:11832..12021Clytia hemisphaericaexon
TCONS_00041477-exon-sc0002887-1510915933:9478..9811TCONS_00041477-exon-sc0002887-1510915933:9478..9811Clytia hemisphaericaexon
TCONS_00041477-exon-sc0002887-1491911889:11832..12021TCONS_00041477-exon-sc0002887-1491911889:11832..12021Clytia hemisphaericaexon
TCONS_00041477-exon-sc0002887-1491911889:9478..9811TCONS_00041477-exon-sc0002887-1491911889:9478..9811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002887supercontigsc0002887:9478..12021 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264182	0.70125	0	0	3.00353	3.43611	4.54825	4.57542	2.91685	2.37831	3.12826	2.47347	2.39504	0.899315	1.21314	1.55164	0.879453	1.11496	0.892974	0.302007	0.811606	0.960002	0.45755	0.549998	0.882027	1.9768	1.29799	0.315121	0.371312	0.574077
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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