TCONS_00041476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041476
Unique NameTCONS_00041476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041476 ID=TCONS_00041476|Name=TCONS_00041476|organism=Clytia hemisphaerica|type=transcript|length=367bp
ACAAAGGGCCCTGATTACGAGAAATGGTGCAAGAAAAGATGGCGGataaa
attgtaaacaaagcagatttcTCAACAAGAAAACGATATAAAAATCAGAT
GCTTGGATTAATGAACATTCAGAAGACTTGTACAAAATCTTAAGTCCTCC
TGGCAAGTTCATTTTGTTTGGTGAATGGTTATTTACAAAACATTCTATAC
ATTACACAAGACTCCCAAGTCTATTCTTAGCCTTTGATATCTTTGATGTA
CAAAGGAAGGAATACTTAGATGTTGGTAGTCGTGatgatattttaaacaa
aacaagCATACAAACAGTTCCTAAGATTGCTGAGCATGAAAACAATTTGA
CAAGAAATAGGGTTAGT
Run BLAST on NCBI

transcript from alignment at sc0002887:13..771-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041476 ID=TCONS_00041476|Name=TCONS_00041476|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at sc0002887:13..771- (Clytia hemisphaerica)
ACAAAGGGCCCTGATTACGAGAAATGGTGCAAGAAAAGATGGCGGATAAA
ATTGTAAACAAAGCAGATTTCTCAACAAGAAAACGATATAAAAATCAGGT
AAAAGTAACTAAATTTCAATTAAGACAGCAACTTTTACTCTCAAGTTGGT
CATGGATTTCTTCAAATTCAAAAGAANATATAAAAATCAGGTAAAAGTAA
CTAAATTTCAATTAAGACAGCAACTTTTACTCTCAAGTTGGTCATGGATT
TCTTCAAATTCAAAAGAACAAAACATATTTTTGACGCTGGGGGAAATGGA
GTTACAAGGGACGATTTAGTGATGACAAAAAAAGAAGCAGAAAATTTTCT
TAAAAGTTCAACTTTTGTAATCGAAGAAAAAGTTGATGGGGCTAATATTG
GTTTGAGTATGGATGAAAACTTCACAATTAGAGCTCAAAATAGATCTCAC
TATGTTAACAGCTCAACTCATAAACAATTTTCAACATTAGATGCTTGGAT
TAATGAACATTCAGAAGACTTGTACAAAATCTTAAGTCCTCCTGGCAAGT
TCATTTTGTTTGGTGAATGGTTATTTACAAAACATTCTATACATTACACA
AGACTCCCAAGTCTATTCTTAGCCTTTGATATCTTTGATGTACAAAGGAA
GGAATACTTAGATGTTGGTAGTCGTGATGATATTTTAAACAAAACAAGCA
TACAAACAGTTCCTAAGATTGCTGAGCATGAAAACAATTTGACAAGAAAT
AGGGTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025440XLOC_025440Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041476-exon-sc0002887-1575043694:674..771TCONS_00041476-exon-sc0002887-1575043694:674..771Clytia hemisphaericaexon
TCONS_00041476-exon-sc0002887-1575043694:13..281TCONS_00041476-exon-sc0002887-1575043694:13..281Clytia hemisphaericaexon
TCONS_00041476-exon-sc0002887-1510915933:674..771TCONS_00041476-exon-sc0002887-1510915933:674..771Clytia hemisphaericaexon
TCONS_00041476-exon-sc0002887-1510915933:13..281TCONS_00041476-exon-sc0002887-1510915933:13..281Clytia hemisphaericaexon
TCONS_00041476-exon-sc0002887-1491911889:674..771TCONS_00041476-exon-sc0002887-1491911889:674..771Clytia hemisphaericaexon
TCONS_00041476-exon-sc0002887-1491911889:13..281TCONS_00041476-exon-sc0002887-1491911889:13..281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002887supercontigsc0002887:13..771 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3575	1.13683	0.511828	0	23.0159	11.3401	12.1038	18.7136	0	0	0.927956	1.84528	0.173446	1.21898	0	1.09589	1.94267	2.08721	0.539125	0.988404	3.80623	1.46567	3.90437	8.68735	0.821742	8.94454	6.06924	3.46509	5.40699	5.72722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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