TCONS_00041474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041474
Unique NameTCONS_00041474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041474 ID=TCONS_00041474|Name=TCONS_00041474|organism=Clytia hemisphaerica|type=transcript|length=419bp
AAACGAAGTCGAAACGAAGTGGAAACGAAACATAAACGAAGCTTTCGTTc
cattttcgtttaaaaatgaaacattattTGGAGACACTCCCTTATCCACT
GAAGTATGGCGTATCAAAGACACAAACGATCAACCAACCGTATCCTGGCA
AACCATCCGCAAATCTAAAGCATTCACTCCAGAAACCAAATGATGTAATT
TGTGTCTTGCCAAGAAATTTGAAACAGCGAACTACCCAGGCAAGAACTTA
CTGAAGAGATCAGAAATTATTGCCAAATGTAGACACAGacgaaaatttca
gcttgataTCTTTGAACCACCTGATGACGTTTGAATGTGacgtcaaaaac
atttttgaagacaacatattgtatattttttaacgTATCTCATTTCACTG
ATGATAGGGGCCTGAGCAC
Run BLAST on NCBI

transcript from alignment at sc0002886:15837..16255

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041474 ID=TCONS_00041474|Name=TCONS_00041474|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0002886:15837..16255 (Clytia hemisphaerica)
GTGCTCAGGCCCCTATCATCAGTGAAATGAGATAcgttaaaaaatataca
atatgttgtcttcaaaaatgtttttgacgtCACATTCAAACGTCATCAGG
TGGTTCAAAGAtatcaagctgaaattttcgtCTGTGTCTACATTTGGCAA
TAATTTCTGATCTCTTCAGTAAGTTCTTGCCTGGGTAGTTCGCTGTTTCA
AATTTCTTGGCAAGACACAAATTACATCATTTGGTTTCTGGAGTGAATGC
TTTAGATTTGCGGATGGTTTGCCAGGATACGGTTGGTTGATCGTTTGTGT
CTTTGATACGCCATACTTCAGTGGATAAGGGAGTGTCTCCAaataatgtt
tcatttttaaacgaaaatggAACGAAAGCTTCGTTTATGTTTCGTTTCCA
CTTCGTTTCGACTTCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025439XLOC_025439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041474-exon-sc0002886-1491911889:15837..16255TCONS_00041474-exon-sc0002886-1491911889:15837..16255Clytia hemisphaericaexon
TCONS_00041474-exon-sc0002886-1510915933:15837..16255TCONS_00041474-exon-sc0002886-1510915933:15837..16255Clytia hemisphaericaexon
TCONS_00041474-exon-sc0002886-1575043694:15837..16255TCONS_00041474-exon-sc0002886-1575043694:15837..16255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002886supercontigsc0002886:15837..16255 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.708784	0.232379	0.268287	0.192786	3.18958	3.32186	4.56783	8.55288	0.854183	2.11247	0	0.837284	1.43394	1.48978	0.252153	0.427171	0.824302	0.597244	1.11576	1.19819	0.453112	0	0.218955	0.197647	5.74839	4.12611	0.466006	0.055153	0	0.294124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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