TCONS_00041471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041471
Unique NameTCONS_00041471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length985

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041471 ID=TCONS_00041471|Name=TCONS_00041471|organism=Clytia hemisphaerica|type=transcript|length=985bp
GACTACAGCATTTCTGAAATAAGTTACACTTACGagtttaaaaaattgag
aagTTAAATCATAAAAGACTagtaaaaaaatcaacaaagctAAAGTAAAa
gctatgaaatatttttattgttttactTAAAAATGTTAACTAAAAACACG
ATTCCTACTCATCTAAAGCCTTCCTAATATTTTTATACAATCtaaaaaga
aatacaaataaaaacgaaagttgAAATGGTGGCCCAATTAAAACCATTTC
ACTCTAAGGGTTGAAAATGTTGTCCTTATctatcaaaatctttttctgcC
TTGTGATGCTGTTGTAGTTTGGGAATTAAGCATAAAATCAAAGCTTCTCC
TCTACCTGCCACAAATGATacgatgaatgaaaattatatCTAACGTTTGA
GGAAATTTTCATATTCTTCTTGCTTGCTGCCATAATCTCTGTTTTGTTTG
CGATTCCAACCGCCACCTCCTCCGCTGTTTCGACGTCCACCACGATTCCC
ACCTCTGCCACCACCTCTACGTCCAGGCGATTTCTCGAAAGAATTTCTTT
TATTCTTGTTGGTATTTTCATACTCATCCATGCGTACTCCTTTTCTTTCA
CTTGGTAATGAATAAAGTGTTCCTTTAGCCCCTCCAGTGGCAGCTCTTTC
TTTCTTAGCGGGAAGATTTTCCAAGCTGATTGGTGTAATACCAGCACGTT
TACGCTTCTCCTCAACACTTTCATTTGAACTGGTCAAAGGGTTAGCTTTC
GATTTCCAAGAGACCTGAATATTGCATTTGTAAGAGGGTGGCTTGCGTAA
GAAATCCTTGAGCAAAGCGTAAATGTTATTACATGTTCTCAAGACAACTA
CTTTCAGTTTATTATCTGATTCTTCCAATTTCGCACCATCTGATCCTTGC
AGAGACATCTTGAGTTGCTTGATGTACGCTTGTACCATTCGACCAAAATA
TTGAAGACGTGTACGGAACTCTTTCAACTTATCTG
Run BLAST on NCBI

protein sequence of TCONS_00041471-protein

>TCONS_00041471-protein ID=TCONS_00041471-protein|Name=TCONS_00041471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
DKLKEFRTRLQYFGRMVQAYIKQLKMSLQGSDGAKLEESDNKLKVVVLRT
CNNIYALLKDFLRKPPSYKCNIQVSWKSKANPLTSSNESVEEKRKRAGIT
PISLENLPAKKERAATGGAKGTLYSLPSERKGVRMDEYENTNKNKRNSFE
KSPGRRGGGRGGNRGGRRNSGGGGGWNRKQNRDYGSKQEEYENFLKR
Run BLAST on NCBI

transcript from alignment at sc0002886:1..985

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041471 ID=TCONS_00041471|Name=TCONS_00041471|organism=Clytia hemisphaerica|type=transcript|length=985bp|location=Sequence derived from alignment at sc0002886:1..985 (Clytia hemisphaerica)
CAGATAAGTTGAAAGAGTTCCGTACACGTCTTCAATATTTTGGTCGAATG
GTACAAGCGTACATCAAGCAACTCAAGATGTCTCTGCAAGGATCAGATGG
TGCGAAATTGGAAGAATCAGATAATAAACTGAAAGTAGTTGTCTTGAGAA
CATGTAATAACATTTACGCTTTGCTCAAGGATTTCTTACGCAAGCCACCC
TCTTACAAATGCAATATTCAGGTCTCTTGGAAATCGAAAGCTAACCCTTT
GACCAGTTCAAATGAAAGTGTTGAGGAGAAGCGTAAACGTGCTGGTATTA
CACCAATCAGCTTGGAAAATCTTCCCGCTAAGAAAGAAAGAGCTGCCACT
GGAGGGGCTAAAGGAACACTTTATTCATTACCAAGTGAAAGAAAAGGAGT
ACGCATGGATGAGTATGAAAATACCAACAAGAATAAAAGAAATTCTTTCG
AGAAATCGCCTGGACGTAGAGGTGGTGGCAGAGGTGGGAATCGTGGTGGA
CGTCGAAACAGCGGAGGAGGTGGCGGTTGGAATCGCAAACAAAACAGAGA
TTATGGCAGCAAGCAAGAAGAATATGAAAATTTCCTCAAACGTTAGatat
aattttcattcatcgtATCATTTGTGGCAGGTAGAGGAGAAGCTTTGATT
TTATGCTTAATTCCCAAACTACAACAGCATCACAAGgcagaaaaagattt
tgatagATAAGGACAACATTTTCAACCCTTAGAGTGAAATGGTTTTAATT
GGGCCACCATTTcaactttcgtttttatttgtatttctttttaGATTGTA
TAAAAATATTAGGAAGGCTTTAGATGAGTAGGAATCGTGTTTTTAGTTAA
CATTTTTAagtaaaacaataaaaatatttcatagctTTTACTTTagcttt
gttgatttttttactAGTCTTTTATGATTTAActtctcaattttttaaac
tCGTAAGTGTAACTTATTTCAGAAATGCTGTAGTC

Coding sequence (CDS) from alignment at sc0002886:1..985

>TCONS_00041471 ID=TCONS_00041471|Name=TCONS_00041471|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0002886:1..985 (Clytia hemisphaerica)
GATAAGTTGAAAGAGTTCCGTACACGTCTTCAATATTTTGGTCGAATGGT
ACAAGCGTACATCAAGCAACTCAAGATGTCTCTGCAAGGATCAGATGGTG
CGAAATTGGAAGAATCAGATAATAAACTGAAAGTAGTTGTCTTGAGAACA
TGTAATAACATTTACGCTTTGCTCAAGGATTTCTTACGCAAGCCACCCTC
TTACAAATGCAATATTCAGGTCTCTTGGAAATCGAAAGCTAACCCTTTGA
CCAGTTCAAATGAAAGTGTTGAGGAGAAGCGTAAACGTGCTGGTATTACA
CCAATCAGCTTGGAAAATCTTCCCGCTAAGAAAGAAAGAGCTGCCACTGG
AGGGGCTAAAGGAACACTTTATTCATTACCAAGTGAAAGAAAAGGAGTAC
GCATGGATGAGTATGAAAATACCAACAAGAATAAAAGAAATTCTTTCGAG
AAATCGCCTGGACGTAGAGGTGGTGGCAGAGGTGGGAATCGTGGTGGACG
TCGAAACAGCGGAGGAGGTGGCGGTTGGAATCGCAAACAAAACAGAGATT
ATGGCAGCAAGCAAGAAGAATATGAAAATTTCCTCAAACGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025436XLOC_025436Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041471-proteinTCONS_00041471-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041471-exon-sc0002886-1491911889:1..985TCONS_00041471-exon-sc0002886-1491911889:1..985Clytia hemisphaericaexon
TCONS_00041471-exon-sc0002886-1510915933:1..985TCONS_00041471-exon-sc0002886-1510915933:1..985Clytia hemisphaericaexon
TCONS_00041471-exon-sc0002886-1575043694:1..985TCONS_00041471-exon-sc0002886-1575043694:1..985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002886supercontigsc0002886:1..985 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3927	8.44016	125.288	149.681	138.232	101.272	52.0891	55.7238	38.408	34.0148	24.9382	22.1184	15.7398	14.4715	24.2945	20.2249	37.0335	30.5653	3.5886	6.24888	20.6227	23.4965	30.5387	28.5467	28.397	31.206	21.1907	15.705	21.0047	21.9853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008383API5
Blast
[Close]
BLAST of TCONS_00041471 vs. Swiss-Prot (Human)
Match: API5 (Apoptosis inhibitor 5 OS=Homo sapiens GN=API5 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.404e-21
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = -3 
Query:  753 DKLKEFRTRLQYFGRMVQAYIKQLKMSLQGSDGAKLEESDNKLKVVVLRTCNNIYALLKDFLRKPPSYKCNIQVSWK 983
            +KLK+F+ RLQYF R +Q YI+QL+++LQG  G  L+  +NK+KVV L+  NNI  L+KD    PPSYK  + +SWK
Sbjct:  368 EKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWK 444
The following BLAST results are available for this feature:
BLAST of TCONS_00041471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
API59.404e-2151.95Apoptosis inhibitor 5 OS=Homo sapiens GN=API5 PE=1... [more]
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