TCONS_00041469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041469
Unique NameTCONS_00041469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041469 ID=TCONS_00041469|Name=TCONS_00041469|organism=Clytia hemisphaerica|type=transcript|length=797bp
TAAACCTTTATTCCTCCATGTTATAAAATCCTGGCGTCCATTCATGTTAT
CAATTGAAATCACAATCCTGCAAACAAATTTGCATAACAAatttattaca
cccctgtctcacagccccgatggaACTTCTTTCCCACAGTGGAGATGAAC
ATTTTTAAGAAATCTCaaaggggataaaaattctattgtgcTGNTACTCC
ATGTTATAAAATCCTGGCGTCCATTCATGTTATCAATTGAAATCACAATC
CGGGATGACACAGGGTGTATTACATCACAACTTGAATAAGAATCCAAAAA
CATAATCTCAGGACTAACCAAGATCACTTTTTCATTTGTGTTGTTGTCGT
TTGAATTTGGAATGCTTATCCATAGTTTGTggcaattcttttttcaattc
ttcttcAAGGATTCctttaaaattcttataagcATCCACCTTGCTGTCAA
CCTCCTCCTTCTTTTCGCGGACCTTTTGTAAACAATCCTTAGTGTATAGC
CTTGGGTTACGTCCCTCATCaatgtatttaaaaatttctggtgGTACAAA
TATGTCTGAAAatgcatttttgtttttatcaatttcttgCATGTTAGATA
TCATATCATTGAGTTTTGTATTAAGAGCTGGTTGAGCACCTGGTTGGAAA
TCACTCACCATGATACCAATCTGTCGACAGTTTTCAATAAAATCTGctaa
attattttccaaatgaTCAAAATCTTGTTTAGACGCTTTACCTTCTTGTT
TGTcattcattatttttctttgttattttttaattattttttctctg
Run BLAST on NCBI

transcript from alignment at sc0002886:1908..2950-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041469 ID=TCONS_00041469|Name=TCONS_00041469|organism=Clytia hemisphaerica|type=transcript|length=1043bp|location=Sequence derived from alignment at sc0002886:1908..2950- (Clytia hemisphaerica)
TAAACCTTTATTCCTCCATGTTATAAAATCCTGGCGTCCATTCATGTTAT
CAATTGAAATCACAATCCTGCAAACAAATTTGCATAACAAATTTATTACA
CCCCTGTCTCACAGCCCCGATGGAACTTCTTTCCCACAGTGGAGATGAAC
ATTTTTAAGAAATCTCAAAGGGGATAAAAATTCTATTGTGCTGNTACTCC
ATGTTATAAAATCCTGGCGTCCATTCATGTTATCAATTGAAATCACAATC
ATGCAAACAAATTTGCATAACGAATTTATTACACCCCTGTCTCACAGCCC
CGATGGAACTTCTTTCCCGCAGTGGAGATGAACATTTTTAAGAAATCTCA
AAGGGCATAAAAATTCTATTGTGCTCAGGTCTAAAAAATTCATTGGGGAT
AGTTTTGGATTGCAATTTTCCTTCCATTGAATTTCAAACTAGGATGAAAA
CAATGTCAATTTCCAAGTGGGGCTGAAAATGTAGGTTATATCTCACCGGG
ATGACACAGGGTGTATTACATCACAACTTGAATAAGAATCCAAAAACATA
ATCTCAGGACTAACCAAGATCACTTTTTCATTTGTGTTGTTGTCGTTTGA
ATTTGGAATGCTTATCCATAGTTTGTGGCAATTCTTTTTTCAATTCTTCT
TCAAGGATTCCTTTAAAATTCTTATAAGCATCCACCTTGCTGTCAACCTC
CTCCTTCTTTTCGCGGACCTTTTGTAAACAATCCTTAGTGTATAGCCTTG
GGTTACGTCCCTCATCAATGTATTTAAAAATTTCTGGTGGTACAAATATG
TCTGAAAATGCATTTTTGTTTTTATCAATTTCTTGCATGTTAGATATCAT
ATCATTGAGTTTTGTATTAAGAGCTGGTTGAGCACCTGGTTGGAAATCAC
TCACCATGATACCAATCTGTCGACAGTTTTCAATAAAATCTGCTAAATTA
TTTTCCAAATGATCAAAATCTTGTTTAGACGCTTTACCTTCTTGTTTGTC
ATTCATTATTTTTCTTTGTTATTTTTTAATTATTTTTTCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025435XLOC_025435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041469-exon-sc0002886-1575043694:2701..2950TCONS_00041469-exon-sc0002886-1575043694:2701..2950Clytia hemisphaericaexon
TCONS_00041469-exon-sc0002886-1575043694:1908..2454TCONS_00041469-exon-sc0002886-1575043694:1908..2454Clytia hemisphaericaexon
TCONS_00041469-exon-sc0002886-1510915933:2701..2950TCONS_00041469-exon-sc0002886-1510915933:2701..2950Clytia hemisphaericaexon
TCONS_00041469-exon-sc0002886-1510915933:1908..2454TCONS_00041469-exon-sc0002886-1510915933:1908..2454Clytia hemisphaericaexon
TCONS_00041469-exon-sc0002886-1491911889:2701..2950TCONS_00041469-exon-sc0002886-1491911889:2701..2950Clytia hemisphaericaexon
TCONS_00041469-exon-sc0002886-1491911889:1908..2454TCONS_00041469-exon-sc0002886-1491911889:1908..2454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002886supercontigsc0002886:1908..2950 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.386107	0	0	0	1.66581	0	0	2.52645e-07	2.05773	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
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BLAST of TCONS_00041469 vs. Swiss-Prot (Human)
Match: MED10 (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.761e-38
Identity = 64/128 (50.00%), Postives = 90/128 (70.31%), Query Frame = -2 
Query:  338 FDHLENNLADFIENCRQIGIMVSDFQPGAQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTKDCLQKVREKKEEVDSKVDAYKNFKGIXXXXXXXXLPQTMDKHSKFKRQQH 721
            FDHLE +L  F+EN RQ+GI+VSDFQP +Q  LN KLN +++ +Q+IDK +    DI VP E+F+YID+GRNP+LYTK+CL++   K E+V  K+D  K FK +L +EL K  P+ M K+   + + H
Sbjct:    5 FDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIRGEDH 132
The following BLAST results are available for this feature:
BLAST of TCONS_00041469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED105.761e-3850.00Mediator of RNA polymerase II transcription subuni... [more]
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