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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041467 ID=TCONS_00041467|Name=TCONS_00041467|organism=Clytia hemisphaerica|type=transcript|length=2711bp
TTAAGTTTCCAATTTGacttccaaaaattaataatcAATATTTTGTGGAC
ATGTTCCTAAACgtttatatttattttccagagaaaaaataattaaaaaa
taacaaagaaaaataatgaatgACAAACAAGAAGGTAAAGCGTCTAAACA
AGATTTTGAtcatttggaaaataatttagCAGATTTTATTGAAAACTGTC
GACAGATTGGTATCATGGTGAGTGATTTCCAACCAGGTGCTCAACCAGCT
CTTAATACAAAACTCAATGATATGATATCTAACATGcaagaaattgataa
aaacaaaaatgcatTTTCAGACATATTTGTACcaccagaaatttttaaat
acattGATGAGGGACGTAACCCAAGGCTATACACTAAGGATTGTTTACAA
AAGGTCCGCGAAAAGAAGGAGGAGGTTGACAGCAAGGTGGATgcttataa
gaattttaaagGAATCCTTgaagaagaattgaaaaaagaattgccACAAA
CTATGGATAAGCATTCCAAATTCAAACGACAACAACACAAATGAAAAAGT
GATCTTGGTTAGTCCTGAGATTATGTTTTTGGATTCTTATTCAAGTTGTG
ATGTAATACACCCTGTGTCATCCCGGTGAGATATAACCTACattttcagc
cccacttggaaattgacATTGTTTTCATCCTagtttgaaattcaatggaa
ggAAAATTGCAATCCAAAACTATCCCCAATGAATTTTTTAGACCTGAgca
caatagaatttttatgcCCTTTGAGATTTCTTAAAAATGTTCATCTCCAC
TGCGGGAAAGAAGTtccatcggggctgtgagacaggggtgtaataaatTC
GTTATGCAAATTTGTTTGCATGATTGTGATTTCAATTGATAACATGAATG
GACGCCAGGATTTTATAACATGGAGTANCAgcacaatagaatttttatcc
cctttGAGATTTCTTAAAAATGTTCATCTCCACTGTGGGAAAGAAGTtcc
atcggggctgtgagacaggggtgtaataaatTTGTTATGCAAATTTGTTT
GCAGGATTGTGATTTCAATTGATAACATGAATGGACGCCAGGATTTTATA
ACATGGAGGAATAAAGGTTTACTTTGAGGATATCTTCATGGAATGCAATC
TTTATTATTTTCAAGTGCGAGAAATTAATTTTAGGGGTGGTTATACTTTC
CAGACAAAAAGATGATTGGATCAAACTTAAGGTAGTTTTCTTGACATAAT
AAGCCTCTTGCCGTATTGAATAGATATGATTTTTTTAGATTCACAGGATT
CACCAATTTACATTACAGTACAGGATTTGATTTACCTTGAGTTCTCCTTG
TATCGCTGGGAATTTTGAATGTAGTTTTTTAAAGATCACTTGAATTTGTA
AATAGATAATTGTGATTAAAAGTAATGAATTATCTCGTTCTCATCATTTT
GATATAATTGAATATTGACAATTCTGACTGTCAATATCAAAGCACCTCAT
TGGTAAAAATTCTGGTCCCGGACAATTTGAcgaaatttaaaggttttgtt
tttaaataagagtgatatcgtttgtttactcatcaattttaattcacaag
ctttttcacattggattgacacatatGTGGAGCAGGAtttgtcagaaaga
ggaaaagaaaaacattttttgcttatatcagcataatataacaatagcaa
gacactatcctgatatgaaatatgtgtctggtatgaaacggaaacactta
tgtaaaaataaaacctttaaagcttGAACTTTTTACATTCTGTTCTAAAT
TGAATCGCCTAGTTTTTAAAATTGCTCATTATACAccatatataatattt
tttctttcagtaacaaaaataacacattaaatataaacaaaaaagtcaaa
atgtgGCGGCAGGCACGCTCAGTGAATCAAAAACTATTTCCACAATTCGA
AAGTCTGAAGCAAGGACGATTATCGAAGGTGTTTGATATGTACCGTGATT
ACACGCAGGCTTTGAAAGACACAGTGGGAGTAATCAAGGAAAAACCTATC
AAATGTACCGTATACGGAACATTATTGACACTTTCCGTATATTGCAATCA
CCGTAATCCGGACATGGGCAGTTACAGGCAATCATTATTGGATGCATCTA
ATGAACACACTTTGCTTAGTGATTCTATACGGAATAAAAAATCAGCGGAC
GAGGTTAAAAAACTGATGAAATATGTTGCCGAAGATAGGCTACAATTGAT
TCATTTTGGAGTGTTTTCTGTCATTTTATTAAATGATCATTCGAAATATC
ATGATGCTTATGATAAACACTGTAGTACTATACAATCACGTTGGATTTAT
ATTGATGAGTGGAAGGAGAGAATAAAAGATGTTGGATTTTTGGATAAATG
GTATTTTTTGGAGCGAAACATGATTGATTTTGATGTCAATGAGGATGAGt
ttaattgagatttttcaatttgtttactGTTTTTTGgatcgaaaaatgaa
aagattttttgctgACAGTCTATATTATAACGTAGAACAAAATTTACTAT
AGAATTGTATATACCtgacctttttttataagaaatccgAAATTCGTTTT
AACATACACATTTTACAATCACCTTTTAAATACCCAAAATCGCTTTATCT
CTGTTCGAAGTGTTGATAAACACGAAATAAAAAGCccttcaatagaaatt
ttacaAACTGC Run BLAST on NCBI transcript from alignment at sc0002886:1830..4540+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041467 ID=TCONS_00041467|Name=TCONS_00041467|organism=Clytia hemisphaerica|type=transcript|length=2711bp|location=Sequence derived from alignment at sc0002886:1830..4540+ (Clytia hemisphaerica)
TTAAGTTTCCAATTTGacttccaaaaattaataatcAATATTTTGTGGAC
ATGTTCCTAAACgtttatatttattttccagagaaaaaataattaaaaaa
taacaaagaaaaataatgaatgACAAACAAGAAGGTAAAGCGTCTAAACA
AGATTTTGAtcatttggaaaataatttagCAGATTTTATTGAAAACTGTC
GACAGATTGGTATCATGGTGAGTGATTTCCAACCAGGTGCTCAACCAGCT
CTTAATACAAAACTCAATGATATGATATCTAACATGcaagaaattgataa
aaacaaaaatgcatTTTCAGACATATTTGTACcaccagaaatttttaaat
acattGATGAGGGACGTAACCCAAGGCTATACACTAAGGATTGTTTACAA
AAGGTCCGCGAAAAGAAGGAGGAGGTTGACAGCAAGGTGGATgcttataa
gaattttaaagGAATCCTTgaagaagaattgaaaaaagaattgccACAAA
CTATGGATAAGCATTCCAAATTCAAACGACAACAACACAAATGAAAAAGT
GATCTTGGTTAGTCCTGAGATTATGTTTTTGGATTCTTATTCAAGTTGTG
ATGTAATACACCCTGTGTCATCCCGGTGAGATATAACCTACattttcagc
cccacttggaaattgacATTGTTTTCATCCTagtttgaaattcaatggaa
ggAAAATTGCAATCCAAAACTATCCCCAATGAATTTTTTAGACCTGAgca
caatagaatttttatgcCCTTTGAGATTTCTTAAAAATGTTCATCTCCAC
TGCGGGAAAGAAGTtccatcggggctgtgagacaggggtgtaataaatTC
GTTATGCAAATTTGTTTGCATGATTGTGATTTCAATTGATAACATGAATG
GACGCCAGGATTTTATAACATGGAGTANCAgcacaatagaatttttatcc
cctttGAGATTTCTTAAAAATGTTCATCTCCACTGTGGGAAAGAAGTtcc
atcggggctgtgagacaggggtgtaataaatTTGTTATGCAAATTTGTTT
GCAGGATTGTGATTTCAATTGATAACATGAATGGACGCCAGGATTTTATA
ACATGGAGGAATAAAGGTTTACTTTGAGGATATCTTCATGGAATGCAATC
TTTATTATTTTCAAGTGCGAGAAATTAATTTTAGGGGTGGTTATACTTTC
CAGACAAAAAGATGATTGGATCAAACTTAAGGTAGTTTTCTTGACATAAT
AAGCCTCTTGCCGTATTGAATAGATATGATTTTTTTAGATTCACAGGATT
CACCAATTTACATTACAGTACAGGATTTGATTTACCTTGAGTTCTCCTTG
TATCGCTGGGAATTTTGAATGTAGTTTTTTAAAGATCACTTGAATTTGTA
AATAGATAATTGTGATTAAAAGTAATGAATTATCTCGTTCTCATCATTTT
GATATAATTGAATATTGACAATTCTGACTGTCAATATCAAAGCACCTCAT
TGGTAAAAATTCTGGTCCCGGACAATTTGAcgaaatttaaaggttttgtt
tttaaataagagtgatatcgtttgtttactcatcaattttaattcacaag
ctttttcacattggattgacacatatGTGGAGCAGGAtttgtcagaaaga
ggaaaagaaaaacattttttgcttatatcagcataatataacaatagcaa
gacactatcctgatatgaaatatgtgtctggtatgaaacggaaacactta
tgtaaaaataaaacctttaaagcttGAACTTTTTACATTCTGTTCTAAAT
TGAATCGCCTAGTTTTTAAAATTGCTCATTATACAccatatataatattt
tttctttcagtaacaaaaataacacattaaatataaacaaaaaagtcaaa
atgtgGCGGCAGGCACGCTCAGTGAATCAAAAACTATTTCCACAATTCGA
AAGTCTGAAGCAAGGACGATTATCGAAGGTGTTTGATATGTACCGTGATT
ACACGCAGGCTTTGAAAGACACAGTGGGAGTAATCAAGGAAAAACCTATC
AAATGTACCGTATACGGAACATTATTGACACTTTCCGTATATTGCAATCA
CCGTAATCCGGACATGGGCAGTTACAGGCAATCATTATTGGATGCATCTA
ATGAACACACTTTGCTTAGTGATTCTATACGGAATAAAAAATCAGCGGAC
GAGGTTAAAAAACTGATGAAATATGTTGCCGAAGATAGGCTACAATTGAT
TCATTTTGGAGTGTTTTCTGTCATTTTATTAAATGATCATTCGAAATATC
ATGATGCTTATGATAAACACTGTAGTACTATACAATCACGTTGGATTTAT
ATTGATGAGTGGAAGGAGAGAATAAAAGATGTTGGATTTTTGGATAAATG
GTATTTTTTGGAGCGAAACATGATTGATTTTGATGTCAATGAGGATGAGt
ttaattgagatttttcaatttgtttactGTTTTTTGgatcgaaaaatgaa
aagattttttgctgACAGTCTATATTATAACGTAGAACAAAATTTACTAT
AGAATTGTATATACCtgacctttttttataagaaatccgAAATTCGTTTT
AACATACACATTTTACAATCACCTTTTAAATACCCAAAATCGCTTTATCT
CTGTTCGAAGTGTTGATAAACACGAAATAAAAAGCccttcaatagaaatt
ttacaAACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041467-exon-sc0002886-1491911889:1830..4540 | TCONS_00041467-exon-sc0002886-1491911889:1830..4540 | Clytia hemisphaerica | exon |
| TCONS_00041467-exon-sc0002886-1510915933:1830..4540 | TCONS_00041467-exon-sc0002886-1510915933:1830..4540 | Clytia hemisphaerica | exon |
| TCONS_00041467-exon-sc0002886-1575043694:1830..4540 | TCONS_00041467-exon-sc0002886-1575043694:1830..4540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002886 | supercontig | sc0002886:1830..4540 + |
Blast
BLAST of TCONS_00041467 vs. Swiss-Prot (Human)
Match: MED10 (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.757e-35 Identity = 64/128 (50.00%), Postives = 90/128 (70.31%), Query Frame = 2
Query: 155 FDHLENNLADFIENCRQIGIMVSDFQPGAQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTKDCLQKVREKKEEVDSKVDAYKNFKGIXXXXXXXXXPQTMDKHSKFKRQQH 538
FDHLE +L F+EN RQ+GI+VSDFQP +Q LN KLN +++ +Q+IDK + DI VP E+F+YID+GRNP+LYTK+CL++ K E+V K+D K FK +L +EL K P+ M K+ + + H
Sbjct: 5 FDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIRGEDH 132
The following BLAST results are available for this feature:
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