TCONS_00041465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041465
Unique NameTCONS_00041465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1032

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041465 ID=TCONS_00041465|Name=TCONS_00041465|organism=Clytia hemisphaerica|type=transcript|length=1032bp
TTAAGTTTCCAATTTGacttccaaaaattaataatcAATATTTTGTGGAC
ATGTTCCTAAACgtttatatttattttccagagaaaaaataattaaaaaa
taacaaagaaaaataatgaatgACAAACAAGAAGGTAAAGCGTCTAAACA
AGATTTTGAtcatttggaaaataatttagCAGATTTTATTGAAAACTGTC
GACAGATTGGTATCATGGTGAGTGATTTCCAACCAGGTGCTCAACCAGCT
CTTAATACAAAACTCAATGATATGATATCTAACATGcaagaaattgataa
aaacaaaaatgcatTTTCAGACATATTTGTACcaccagaaatttttaaat
acattGATGAGGGACGTAACCCAAGGCTATACACTAAGGATTGTTTACAA
AAGGTCCGCGAAAAGAAGGAGGAGGTTGACAGCAAGGTGGATgcttataa
gaattttaaagGAATCCTTgaagaagaattgaaaaaagaattgccACAAA
CTATGGATAAGCATTCCAAATTCAAACGACAACAACACAAATGAAAAAGT
GATCTTGGTTAGTCCTGAGATTATGTTTTTGGATTCTTATTCAAGTTGTG
ATGTAATACACCCTGTGTCATCCCGGATTGTGATTTCAATTGATAACATG
AATGGACGCCAGGATTTTATAACATGGAGGAATAAAGGTTTACTTTGAGG
ATATCTTCATGGAATGCAATCTTTATTATTTTCAAGTGCGAGAAATTAAT
TTTAGGGGTGGTTATACTTTCCAGACAAAAAGATGATTGGATCAAACTTA
AGGTAGTTTTCTTGACATAATAAGCCTCTTGCCGTATTGAATAGATATGA
TTTTTTTAGATTCACAGGATTCACCAATTTACATTACAGTACAGGATTTG
ATTTACCTTGAGTTCTCCTTGTATCGCTGGGAATTTTGAATGTAGTTTTT
TAAAGATCACTTGAATTTGTAAATAGATAATTGTGATTAAAAGTAATGAA
TTATCTCGTTCTCATCATTTTGATATAATTGA
Run BLAST on NCBI

transcript from alignment at sc0002886:1830..3290+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041465 ID=TCONS_00041465|Name=TCONS_00041465|organism=Clytia hemisphaerica|type=transcript|length=1461bp|location=Sequence derived from alignment at sc0002886:1830..3290+ (Clytia hemisphaerica)
TTAAGTTTCCAATTTGacttccaaaaattaataatcAATATTTTGTGGAC
ATGTTCCTAAACgtttatatttattttccagagaaaaaataattaaaaaa
taacaaagaaaaataatgaatgACAAACAAGAAGGTAAAGCGTCTAAACA
AGATTTTGAtcatttggaaaataatttagCAGATTTTATTGAAAACTGTC
GACAGATTGGTATCATGGTGAGTGATTTCCAACCAGGTGCTCAACCAGCT
CTTAATACAAAACTCAATGATATGATATCTAACATGcaagaaattgataa
aaacaaaaatgcatTTTCAGACATATTTGTACcaccagaaatttttaaat
acattGATGAGGGACGTAACCCAAGGCTATACACTAAGGATTGTTTACAA
AAGGTCCGCGAAAAGAAGGAGGAGGTTGACAGCAAGGTGGATgcttataa
gaattttaaagGAATCCTTgaagaagaattgaaaaaagaattgccACAAA
CTATGGATAAGCATTCCAAATTCAAACGACAACAACACAAATGAAAAAGT
GATCTTGGTTAGTCCTGAGATTATGTTTTTGGATTCTTATTCAAGTTGTG
ATGTAATACACCCTGTGTCATCCCGGTGAGATATAACCTACattttcagc
cccacttggaaattgacATTGTTTTCATCCTagtttgaaattcaatggaa
ggAAAATTGCAATCCAAAACTATCCCCAATGAATTTTTTAGACCTGAgca
caatagaatttttatgcCCTTTGAGATTTCTTAAAAATGTTCATCTCCAC
TGCGGGAAAGAAGTtccatcggggctgtgagacaggggtgtaataaatTC
GTTATGCAAATTTGTTTGCATGATTGTGATTTCAATTGATAACATGAATG
GACGCCAGGATTTTATAACATGGAGTANCAgcacaatagaatttttatcc
cctttGAGATTTCTTAAAAATGTTCATCTCCACTGTGGGAAAGAAGTtcc
atcggggctgtgagacaggggtgtaataaatTTGTTATGCAAATTTGTTT
GCAGGATTGTGATTTCAATTGATAACATGAATGGACGCCAGGATTTTATA
ACATGGAGGAATAAAGGTTTACTTTGAGGATATCTTCATGGAATGCAATC
TTTATTATTTTCAAGTGCGAGAAATTAATTTTAGGGGTGGTTATACTTTC
CAGACAAAAAGATGATTGGATCAAACTTAAGGTAGTTTTCTTGACATAAT
AAGCCTCTTGCCGTATTGAATAGATATGATTTTTTTAGATTCACAGGATT
CACCAATTTACATTACAGTACAGGATTTGATTTACCTTGAGTTCTCCTTG
TATCGCTGGGAATTTTGAATGTAGTTTTTTAAAGATCACTTGAATTTGTA
AATAGATAATTGTGATTAAAAGTAATGAATTATCTCGTTCTCATCATTTT
GATATAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025434XLOC_025434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041465-exon-sc0002886-1491911889:1830..2454TCONS_00041465-exon-sc0002886-1491911889:1830..2454Clytia hemisphaericaexon
TCONS_00041465-exon-sc0002886-1510915933:1830..2454TCONS_00041465-exon-sc0002886-1510915933:1830..2454Clytia hemisphaericaexon
TCONS_00041465-exon-sc0002886-1575043694:1830..2454TCONS_00041465-exon-sc0002886-1575043694:1830..2454Clytia hemisphaericaexon
TCONS_00041465-exon-sc0002886-1491911889:2884..3290TCONS_00041465-exon-sc0002886-1491911889:2884..3290Clytia hemisphaericaexon
TCONS_00041465-exon-sc0002886-1510915933:2884..3290TCONS_00041465-exon-sc0002886-1510915933:2884..3290Clytia hemisphaericaexon
TCONS_00041465-exon-sc0002886-1575043694:2884..3290TCONS_00041465-exon-sc0002886-1575043694:2884..3290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002886supercontigsc0002886:1830..3290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.281005	8.76098	14.4041	1.4408	1.84752	1.86819	2.88755	0.100483	0	0	0	0	0.243384	0	0	0	0	0	0	0	0	0	0	0.671725	1.78075	0	0	0	0
Blast
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BLAST of TCONS_00041465 vs. Swiss-Prot (Human)
Match: MED10 (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.968e-37
Identity = 64/128 (50.00%), Postives = 90/128 (70.31%), Query Frame = 2 
Query:  155 FDHLENNLADFIENCRQIGIMVSDFQPGAQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTKDCLQKVREKKEEVDSKVDAYKNFKGIXXXXXXXXXPQTMDKHSKFKRQQH 538
            FDHLE +L  F+EN RQ+GI+VSDFQP +Q  LN KLN +++ +Q+IDK +    DI VP E+F+YID+GRNP+LYTK+CL++   K E+V  K+D  K FK +L +EL K  P+ M K+   + + H
Sbjct:    5 FDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIRGEDH 132
The following BLAST results are available for this feature:
BLAST of TCONS_00041465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED102.968e-3750.00Mediator of RNA polymerase II transcription subuni... [more]
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