TCONS_00041462 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041462
Unique Name	TCONS_00041462
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	628

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002885:11516..12853-
coding sequence from alignment at sc0002885:11516..12853-

transcript sequence

>TCONS_00041462 ID=TCONS_00041462|Name=TCONS_00041462|organism=Clytia hemisphaerica|type=transcript|length=628bp
GGGTTATAAcaattataaaattttcttcagaaCCCAAGAAAAACaatgca
aagaaaaagaagacaaatGATGAGACAgaggcaaaaaaaaacaaggaacA
GAGAGACAGGGAAAACAATATGAAAAAGGCTAAAGCAAAGACAACATCCG
TTCTGGGCcaggaaattttgaataaaacagATGCATTGAAAGACCTAGGT
GTGTCCGATGAAATACTCGACCAATTTGTTGATGCCGACATGTTGAATTA
CAACATCTCCAGAATGGATGAAAGTGAAGattttgaaattgaagaatgct
caaaaacaaaacatgtaGAAGACCCACCACTTTTCCAGCAACAAAGTGAG
AATAATGAAAACCGACCTGCACAAATTAATCTGCCCTTGCCTGCTATCTC
AAAAGattttgaaATTGGAGAATGCTCAAAGACAAAACACATAGAAAACC
CACCACTTTTCCAGCAACAAATTGAGAACAAAAATGAAAACCAACCTGCA
CAAATTAATCTGCCCTCGCCCATTATCCCAAAAGGTAAGTAAATTTCATA
AAGGTCTTATTTGTTATCTTGTCAAACAGAATGGAAATATCAGTATTCAA
TACTGTAAGGCACTGTAATAACCCATCT

Run BLAST on NCBI

protein sequence of TCONS_00041462-protein

>TCONS_00041462-protein ID=TCONS_00041462-protein|Name=TCONS_00041462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
VITIIKFSSEPKKNNAKKKKTNDETEAKKNKEQRDRENNMKKAKAKTTSV
LGQEILNKTDALKDLGVSDEILDQFVDADMLNYNISRMDESEDFEIEECS
KTKHVEDPPLFQQQSENNENRPAQINLPLPAISKDFEIGECSKTKHIENP
PLFQQQIENKNENQPAQINLPSPIIPKGK

Run BLAST on NCBI

transcript from alignment at sc0002885:11516..12853-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041462 ID=TCONS_00041462|Name=TCONS_00041462|organism=Clytia hemisphaerica|type=transcript|length=1338bp|location=Sequence derived from alignment at sc0002885:11516..12853- (Clytia hemisphaerica)
GGGTTATAACAATTATAAAATTTTCTTCAGAACCCAAGAAAAACAATGCA
AAGAAAAAGAAGACAAATGATGAGACAGAGGCAAAAAAAAACAAGGAACA
GAGAGGTGAAAACCGTTATCCAAGATTTACCTTAAGGGAAAATTTTAATG
CAAGACTAAATTAATTTGAATATATAAGTTTTGCAAAAAGGGCAATTTTG
GCATTAATTAATTAGAGTAATTAGAGTTTTCAGTAATAGGAACTGTGTCG
ACTCTGGTCTAATGAAGACTAATTGTTGCTATATTTTATTTTAGACAGGG
AAAACAATATGAAAAAGGCTAAAGCAAAGACAACATCCGTTCTGGGCCAG
GAAATTTTGAATAAAACAGGTATGCATTAAGCTCAGATGGTCAATTAGGT
GTCTAATATGAATATTGGCATTCTAAATAGGATGTTAACACAATTAATCC
ATTCCAGCAGTCAATGTGACTGTAACAAAAATAGAGGCTGGACATTAACA
TTAAGTGCATTACTTTTTATATTTTATTGTATTTATTCTTAGATGCATTG
AAAGACCTAGGTGTGTCCGATGAAATACTCGACCAATTTGTTGATGCCGA
CATGTTGAATTACAACATCTCCAGAATGGATGAAAGTGAAGGTAAAAAGT
TAACCGAATCATTAAAGGCCTAGAGGATAAATCAGAAAAACATGACATGA
AACTTCAGGCACAAACTTAAGCGTAATTTAGCAGTAACAAATTGTGATGT
GTATTTTTTTTACAGATTTTGAAATTGAAGAATGCTCAAAAACAAAACAT
GTAGAAGACCCACCACTTTTCCAGCAACAAAGTGAGAATAATGAAAACCG
ACCTGCACAAATTAATCTGCCCTTGCCTGCTATCTCAAAAGGTAAGTAAA
TTTCATAAAGGTCTTATTTGTTATTTTGTCAAACAGAATGGAAATATCAG
TCTTCAATACTGTAAGGCACTGTAATAAGCAAACTATTGGTAAAAAAAAG
AAGATCATAAAATGAAGATCTTTCTGCTTTTAATAAAAACATGACATGAA
ACTTCAGGCACAAACTTAAACGTAATTTAGCAGTAACAAATTGTGATGTG
TATTTTTTTTTACAGATTTTGAAATTGGAGAATGCTCAAAGACAAAACAC
ATAGAAAACCCACCACTTTTCCAGCAACAAATTGAGAACAAAAATGAAAA
CCAACCTGCACAAATTAATCTGCCCTCGCCCATTATCCCAAAAGGTAAGT
AAATTTCATAAAGGTCTTATTTGTTATCTTGTCAAACAGAATGGAAATAT
CAGTATTCAATACTGTAAGGCACTGTAATAACCCATCT

Coding sequence (CDS) from alignment at sc0002885:11516..12853-

>TCONS_00041462 ID=TCONS_00041462|Name=TCONS_00041462|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0002885:11516..12853- (Clytia hemisphaerica)
ATTTTGAAATTGGAGAATGCTCAAAGACAAAACACATAGAAAACCCACCA
CTTTTCCAGCAACAAATTGAGAACAAAAATGAAAACCAACCTGCACAAAT
TAATCTGCCCTCGCCCATTATCCCAAAAGGTAAGTAAATTTTGAAATTGA
AGAATGCTCAAAAACAAAACATGTAGAAGACCCACCACTTTTCCAGCAAC
AAAGTGAGAATAATGAAAACCGACCTGCACAAATTAATCTGCCCTTGCCT
GCTATCTCAAAAGATGCATTGAAAGACCTAGGTGTGTCCGATGAAATACT
CGACCAATTTGTTGATGCCGACATGTTGAATTACAACATCTCCAGAATGG
ATGAAAGTGAAGACAGGGAAAACAATATGAAAAAGGCTAAAGCAAAGACA
ACATCCGTTCTGGGCCAGGAAATTTTGAATAAAACAGGTTATAACAATTA
TAAAATTTTCTTCAGAACCCAAGAAAAACAATGCAAAGAAAAAGAAGACA
AATGATGAGACAGAGGCAAAAAAAAACAAGGAACAGAGAGATTTTGAAAT
TGGAGAATGCTCAAAGACAAAACACATAGAAAACCCACCACTTTTCCAGC
AACAAATTGAGAACAAAAATGAAAACCAACCTGCACAAATTAATCTGCCC
TCGCCCATTATCCCAAAAGGTAAGTAAATTTTGAAATTGAAGAATGCTCA
AAAACAAAACATGTAGAAGACCCACCACTTTTCCAGCAACAAAGTGAGAA
TAATGAAAACCGACCTGCACAAATTAATCTGCCCTTGCCTGCTATCTCAA
AAGATGCATTGAAAGACCTAGGTGTGTCCGATGAAATACTCGACCAATTT
GTTGATGCCGACATGTTGAATTACAACATCTCCAGAATGGATGAAAGTGA
AGACAGGGAAAACAATATGAAAAAGGCTAAAGCAAAGACAACATCCGTTC
TGGGCCAGGAAATTTTGAATAAAACAGGTTATAACAATTATAAAATTTTC
TTCAGAACCCAAGAAAAACAATGCAAAGAAAAAGAAGACAAATGATGAGA
CAGAGGCAAAAAAAAACAAGGAACAGAGAGATTTTGAAATTGGAGAATGC
TCAAAGACAAAACACATAGAAAACCCACCACTTTTCCAGCAACAAATTGA
GAACAAAAATGAAAACCAACCTGCACAAATTAATCTGCCCTCGCCCATTA
TCCCAAAAGGTAAGTAAATTTTGAAATTGAAGAATGCTCAAAAACAAAAC
ATGTAGAAGACCCACCACTTTTCCAGCAACAAAGTGAGAATAATGAAAAC
CGACCTGCACAAATTAATCTGCCCTTGCCTGCTATCTCAAAAGATGCATT
GAAAGACCTAGGTGTGTCCGATGAAATACTCGACCAATTTGTTGATGCCG
ACATGTTGAATTACAACATCTCCAGAATGGATGAAAGTGAAGACAGGGAA
AACAATATGAAAAAGGCTAAAGCAAAGACAACATCCGTTCTGGGCCAGGA
AATTTTGAATAAAACAGGTTATAACAATTATAAAATTTTCTTCAGAACCC
AAGAAAAACAATGCAAAGAAAAAGAAGACAAATGATGAGACAGAGGCAAA
AAAAAACAAGGAACAGAGAGATTTTGAAATTGGAGAATGCTCAAAGACAA
AACACATAGAAAACCCACCACTTTTCCAGCAACAAATTGAGAACAAAAAT
GAAAACCAACCTGCACAAATTAATCTGCCCTCGCCCATTATCCCAAAAGG
TAAGTAAATTTTGAAATTGAAGAATGCTCAAAAACAAAACATGTAGAAGA
CCCACCACTTTTCCAGCAACAAAGTGAGAATAATGAAAACCGACCTGCAC
AAATTAATCTGCCCTTGCCTGCTATCTCAAAAGATGCATTGAAAGACCTA
GGTGTGTCCGATGAAATACTCGACCAATTTGTTGATGCCGACATGTTGAA
TTACAACATCTCCAGAATGGATGAAAGTGAAGACAGGGAAAACAATATGA
AAAAGGCTAAAGCAAAGACAACATCCGTTCTGGGCCAGGAAATTTTGAAT
AAAACAGGTTATAACAATTATAAAATTTTCTTCAGAACCCAAGAAAAACA
ATGCAAAGAAAAAGAAGACAAATGATGAGACAGAGGCAAAAAAAAACAAG
GAACAGAGAGATTTTGAAATTGGAGAATGCTCAAAGACAAAACACATAGA
AAACCCACCACTTTTCCAGCAACAAATTGAGAACAAAAATGAAAACCAAC
CTGCACAAATTAATCTGCCCTCGCCCATTATCCCAAAAGGTAAGTAAATT
TTGAAATTGAAGAATGCTCAAAAACAAAACATGTAGAAGACCCACCACTT
TTCCAGCAACAAAGTGAGAATAATGAAAACCGACCTGCACAAATTAATCT
GCCCTTGCCTGCTATCTCAAAAGATGCATTGAAAGACCTAGGTGTGTCCG
ATGAAATACTCGACCAATTTGTTGATGCCGACATGTTGAATTACAACATC
TCCAGAATGGATGAAAGTGAAGACAGGGAAAACAATATGAAAAAGGCTAA
AGCAAAGACAACATCCGTTCTGGGCCAGGAAATTTTGAATAAAACAGGTT
ATAACAATTATAAAATTTTCTTCAGAACCCAAGAAAAACAATGCAAAGAA
AAAGAAGACAAATGATGAGACAGAGGCAAAAAAAAACAAGGAACAGAGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025433	XLOC_025433	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041462-protein	TCONS_00041462-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002885	supercontig	sc0002885:11516..12853 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.101913	0	0	0	0	0	0.233926	0	0	0	0	0	0	0	0	0	0	0	0	0	0.123908	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041462 vs. Swiss-Prot (Human)

BLAST of TCONS_00041462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041462 (transcript) - C. hemisphaerica