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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041461 ID=TCONS_00041461|Name=TCONS_00041461|organism=Clytia hemisphaerica|type=transcript|length=479bp
ACCACCCTCAAAAGAGTTCTTCACCGTTGGAAATAATGTTATGAAACAAT
TGCATCCACGGACACCGCATATTTTGTTAACTGATGATGATATTTTGAAG
TTGAGGATTGCGTCCAAAAACTTGAAGGAATGGAGACCTTTCGTCAATGA
GCTTTTGTCAATGAAATTCACGAAAGAAGAGTTGGCCATGTCTTCAGCTG
AaggaaaagaaaacagaaagacAAAGACCTCAAAACCAGCTTTGAACCCC
TTCATCATCAAAGAATTGATAGCCTATACAACAACAAAGTGGCCATATAA
AAAGGCTGAAGGTGACAAACCAGCGGAGGGATGCTCGGAATCATTATGCA
AGCGGACAATAAATAACAAATGTGGATCTGCCAGAAaacTACCCAAGCAG
AAGAACGACGCGTAATCACGGACTGGAACCGACGAACGGGGCgcggaaag
aaatattttaaatgacGACTGGATGGCAG Run BLAST on NCBI protein sequence of TCONS_00041461-protein >TCONS_00041461-protein ID=TCONS_00041461-protein|Name=TCONS_00041461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
PPSKEFFTVGNNVMKQLHPRTPHILLTDDDILKLRIASKNLKEWRPFVNE
LLSMKFTKEELAMSSAEGKENRKTKTSKPALNPFIIKELIAYTTTKWPYK
KAEGDKPAEGCSESLCKRTINNKCGSARKLPKQKNDA Run BLAST on NCBI transcript from alignment at sc0002885:6037..9167- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041461 ID=TCONS_00041461|Name=TCONS_00041461|organism=Clytia hemisphaerica|type=transcript|length=3131bp|location=Sequence derived from alignment at sc0002885:6037..9167- (Clytia hemisphaerica)
ACCACCCTCAAAAGAGTTCTTCACCGTTGGAAATAATGTTATGAAACAAT
TGCATCCACGGACACCGCATATTTTGTTAACTGATGATGATATTTTGAAG
TTGAGGATTGCGTCCAAAAACTTGAAGGAATGGAGACCTTTCGTCAATGA
GCTTTTGTCAATGAAATTCACGAAAGAAGAGTTGGCCATGTAAGGTTACT
TTTCTTTATTTCCAAAGACATTATCATTTTAGCCTGTTTGGTAATTTTAA
TCAATTGTTCTAGCTTTAGAAAAATGTGGGTTAGTCGATCAGGATATTTA
AAAAAATTATCTGAAAATGTAGAAGTTTTGAAGCAATACTTTCCATCTTT
AAAACAATAATGGCAATTAGTGAGGGCTGATCAGTACAGCTGAAAAAAAC
TAGTCATTATTGTATTTGTTACCCGTTTCCTTCAGCTTTGATTGATTTTT
TAGCGTTTTAACGCAAAAAAATAGCGAAAGCAAAAAGAGATCAAAAATTG
TTATAATTTGATGTCAGAAATAAAAAATGAGAGAAATTATGTCAACACAA
TGTCCATTTTCCTTTGAAAAAATGACGACACAATGAAGTTTTCTAACAAC
AAGTAACTTTGGGCAGTGTAGGCCTGTCGTCAGGCGTAGCTATCACAAAT
AAGTTGTGTTCGTGTCGTCCGACCGACTAACTTTCTATCTATCAGTCGGA
AAGTCGGAAATATATCGGATTTTTTTGCAACAGTGATATGCAAAAAATCA
TAATGCAGCTAGTGCGCTTGATAATTCTTGCCGCGCGAACAAACCTATAT
TCAGGGCGCATTTTTTCGATGATTCCAGTGCTGACCGACTTCCTAAGTTC
AGAGCGCACTTTTCCAACGATTTTAGTGCCGACCGACTCTTTTTGGGGCT
GGAAATGACGCGAACACAACTTATATGCGATTGACGCCTCATGTGAAAAG
AACCATTTGTATTGCGTAAAAAGCCCTGTAGCCCACTTTGAAAAAGTAAC
CGGTTCCGGTTAACAATATTGATGAGTGACCTTTGAGCTATTTCCATTTT
GATATGTAAAATTCAATTCAATATTATTTTTTCAATTTTGGAAAACACAG
CGTCAGTATAAGGCACGTGGAACAATATTTAAAATGTCACCCTCAGATCG
TCATAATTCTAACAAAGAATTCTCAAAAATAATCCTGAAATCCAGCTATT
TCTTGATTGTTTTTACCCTTCTTTATTTTTCAGACTGAATAGAACAGATT
TAAATTTAATCGCGTGCCAGGCTTCCTCACATTCTTTTAAAAACAAGACT
AAATGTCAGATGAGGATTTTCCTACCCAGCAGATTTTTTTTCCATCGGTT
GCCTAACCGGCCCACCCACTTTCTCCAAGTTAAATGATGGGAACGAAACA
ATTTATACGAACTACCTAAGAAAATTAGATTTGTNGACGACACAATGAAG
TTTTCTAACAACAAGTAACTTTGGGCAGTGTAGGCCTGTCGTCAGGCGTA
GCTATCACAAATAAGTTGTGTTCGTGTCGTCCGACCGACTAACTTTCTAT
CTATCAGTCGGAAAGTCGGAAATATATCGGATTTTTTTGCAACAGTGATA
TGCAAAAAATCATAATGCAGCTAGTGCGCTTGATAATTCTTGCCGCGCGA
ACAAACCTATATTCAGGGCGCATTTTTTCGATGATTCCAGTGCTGACCGA
CTTCCTAAGTTCAGAGCGCACTTTTCCAACGATTTTAGTGCCGACGGACT
CACTTTTTGGGGCTGGAAATGACGCGAACACAACTTATATGCGATTGACG
CCTCATGTGAAAAGAACCATTTGTATTGCGTAAAAAGCCCTGTAGCCCAC
TTTGAAAAAGTAACCGGTTCCGGTTAACAATATTGATGAGTGACCTTTGA
GCTATTTCCATTTTGATATGTAAAATTCAATTCAATATTATTTTTTCAAT
TTTGGAAAACACAGCGTCAGTATAAGGCACGTGGAACAATATTTAAAATG
TCACCCTCAGATCGTCATAATTCTAACAAAGAATTCTCAAAAATAATCCT
GAAATCCAGCTATTTCTTGATTGTTTTTACCCTTCTTTATTTTTCAGACT
GAATAGAACAGATTTAAATTTAATCGCGTGCCAGGCTTCCTCACATTCTT
TTAAAAACAAGACTAAATGTCAGATGAGGATTTTCCTACCCAGCAGATTT
TTTTCCACCGGTCGCCTAACCGGCCCACCCACTTTCTCCAAGTTAAATGA
TGGGAACGAAACAATTTATACGAACTACCTAAGAAAATTAGATCTGTTAT
GTTCTGCCATTTTGAGCACACAACTACATTGTAGACTTTTAACATTTAAC
ATTGCAACCTCATTTCAGGTCTTCAGCTGAAGGAAAAGAAAACAGAAAGA
CAAAGACCTCAAAACCAGCTTTGAACCCCTTCATCATCAAAGAATTGATA
GGTATGAATTAAATTTGTTGGCCTGTTGTAGGTGTCACCAGCTACTTGTA
ATGTGTTAATGCACACATGTGTTAGTTTTGACCTTTCCACCTAACACTCA
TTGCCCACTGTATGTTTATATGAGACTTGCGAAATTAATAAAATCTTATC
ATCAAATGGACTTACCTGGGTTGAACTTTCAAAATTTCTTTCATCTTAGC
CTATACAACAACAAAGTGGCCATATAAAAAGGCTGAAGGTGACAAACCAG
CGGAGGGATGCTCGGAATCATTATGCAAGCGGACAATAAATAACAAATGT
GGATCTGCCAGAAGTAAGTTTACTTTCAGTCACGTTTGATCACTTTGATA
TTCACAGATTTCTACATATGTATGAGCCTGTCTAGCAGAAGCTGAAAAGA
ACACCATGTTGTGTTCATTTTGTTTTGATTTGGATGTTCCATTTCGACTA
TTTTGCAGAATGATTTTCACTTCTCAAAGTTGACACATTCCTGAGCCGTT
CTAGTCTTGACGGCTATTTTCCCGAACATTACCGCCCGCGCGGCGATTCA
TTTCTTTTAGCACTAACAGCGGGCTTTTTGAAATTTAGAACTACCCAAGC
AGAAGAACGACGCGTAATCACGGACTGGAACCGACGAACGGGGCGCGGAA
AGAAATATTTTAAATGACGACTGGATGGCAG Coding sequence (CDS) from alignment at sc0002885:6037..9167- >TCONS_00041461 ID=TCONS_00041461|Name=TCONS_00041461|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0002885:6037..9167- (Clytia hemisphaerica)
AACTACCCAAGCAGAAGAACGACGCGTAACCTATACAACAACAAAGTGGC
CATATAAAAAGGCTGAAGGTGACAAACCAGCGGAGGGATGCTCGGAATCA
TTATGCAAGCGGACAATAAATAACAAATGTGGATCTGCCAGAAGTCTTCA
GCTGAAGGAAAAGAAAACAGAAAGACAAAGACCTCAAAACCAGCTTTGAA
CCCCTTCATCATCAAAGAATTGATAGCCACCCTCAAAAGAGTTCTTCACC
GTTGGAAATAATGTTATGAAACAATTGCATCCACGGACACCGCATATTTT
GTTAACTGATGATGATATTTTGAAGTTGAGGATTGCGTCCAAAAACTTGA
AGGAATGGAGACCTTTCGTCAATGAGCTTTTGTCAATGAAATTCACGAAA
GAAGAGTTGGCCATAACTACCCAAGCAGAAGAACGACGCGTAACCTATAC
AACAACAAAGTGGCCATATAAAAAGGCTGAAGGTGACAAACCAGCGGAGG
GATGCTCGGAATCATTATGCAAGCGGACAATAAATAACAAATGTGGATCT
GCCAGAAGTCTTCAGCTGAAGGAAAAGAAAACAGAAAGACAAAGACCTCA
AAACCAGCTTTGAACCCCTTCATCATCAAAGAATTGATAGCCACCCTCAA
AAGAGTTCTTCACCGTTGGAAATAATGTTATGAAACAATTGCATCCACGG
ACACCGCATATTTTGTTAACTGATGATGATATTTTGAAGTTGAGGATTGC
GTCCAAAAACTTGAAGGAATGGAGACCTTTCGTCAATGAGCTTTTGTCAA
TGAAATTCACGAAAGAAGAGTTGGCCATAACTACCCAAGCAGAAGAACGA
CGCGTAACCTATACAACAACAAAGTGGCCATATAAAAAGGCTGAAGGTGA
CAAACCAGCGGAGGGATGCTCGGAATCATTATGCAAGCGGACAATAAATA
ACAAATGTGGATCTGCCAGAAGTCTTCAGCTGAAGGAAAAGAAAACAGAA
AGACAAAGACCTCAAAACCAGCTTTGAACCCCTTCATCATCAAAGAATTG
ATAGCCACCCTCAAAAGAGTTCTTCACCGTTGGAAATAATGTTATGAAAC
AATTGCATCCACGGACACCGCATATTTTGTTAACTGATGATGATATTTTG
AAGTTGAGGATTGCGTCCAAAAACTTGAAGGAATGGAGACCTTTCGTCAA
TGAGCTTTTGTCAATGAAATTCACGAAAGAAGAGTTGGCCATAACTACCC
AAGCAGAAGAACGACGCGTAACCTATACAACAACAAAGTGGCCATATAAA
AAGGCTGAAGGTGACAAACCAGCGGAGGGATGCTCGGAATCATTATGCAA
GCGGACAATAAATAACAAATGTGGATCTGCCAGAAGTCTTCAGCTGAAGG
AAAAGAAAACAGAAAGACAAAGACCTCAAAACCAGCTTTGAACCCCTTCA
TCATCAAAGAATTGATAGCCACCCTCAAAAGAGTTCTTCACCGTTGGAAA
TAATGTTATGAAACAATTGCATCCACGGACACCGCATATTTTGTTAACTG
ATGATGATATTTTGAAGTTGAGGATTGCGTCCAAAAACTTGAAGGAATGG
AGACCTTTCGTCAATGAGCTTTTGTCAATGAAATTCACGAAAGAAGAGTT
GGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041461-exon-sc0002885-1575043694:8979..9167 | TCONS_00041461-exon-sc0002885-1575043694:8979..9167 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1575043694:6717..6799 | TCONS_00041461-exon-sc0002885-1575043694:6717..6799 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1575043694:6405..6518 | TCONS_00041461-exon-sc0002885-1575043694:6405..6518 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1575043694:6037..6129 | TCONS_00041461-exon-sc0002885-1575043694:6037..6129 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1510915933:8979..9167 | TCONS_00041461-exon-sc0002885-1510915933:8979..9167 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1510915933:6717..6799 | TCONS_00041461-exon-sc0002885-1510915933:6717..6799 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1510915933:6405..6518 | TCONS_00041461-exon-sc0002885-1510915933:6405..6518 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1510915933:6037..6129 | TCONS_00041461-exon-sc0002885-1510915933:6037..6129 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1491911889:8979..9167 | TCONS_00041461-exon-sc0002885-1491911889:8979..9167 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1491911889:6717..6799 | TCONS_00041461-exon-sc0002885-1491911889:6717..6799 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1491911889:6405..6518 | TCONS_00041461-exon-sc0002885-1491911889:6405..6518 | Clytia hemisphaerica | exon |
| TCONS_00041461-exon-sc0002885-1491911889:6037..6129 | TCONS_00041461-exon-sc0002885-1491911889:6037..6129 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002885 | supercontig | sc0002885:6037..9167 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018379 | BEN_domain |
Blast
The following BLAST results are available for this feature:
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