TCONS_00041449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041449
Unique NameTCONS_00041449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1072

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041449 ID=TCONS_00041449|Name=TCONS_00041449|organism=Clytia hemisphaerica|type=transcript|length=1072bp
gtattTGACTGTTGTCACTGAAGAACCTGTCAACTTTAATTGGGTGACCG
TTATATTTCTTCCCATCCCAGAACCGAGCACACATCTCTACTGCATTGTC
TAGCACCTTCAACCAGCCTTTCTCGTCGTTTTCCTTAGGTTTCTCTCCCG
CAAGGTCATCAGGAAGCGTCACCGTGACTATCTTTGCGTTCAAGAAGGAC
CAGAGACGTTCAATTGGATTGAACCTGGACATACCTGGAGCATAGCACTG
GACAGTCAGCGTATCCAGCTGAAGCTCCTTCCAAAGCATGCCAAGACTCA
TCAAATTGCCGACACCCTTAACCGACCAATCAGGACCCCCGTCTGCGATC
AAAACCACATTCATGACCTGTTTTGTTCGCATTTCACGTTTgatcatttt
cttcaaaaaggaGGTGTGCATGATATTGGTCGTCTCAACTGACCTACAAG
AATGGACCTGCATATTCAAAGAGCCAGACCGTGGCCATTTCACTTTAGGC
CTGCCAACTTTGTCACTCATGAGACGTTTCTTTGGGATGACCACACAAGA
ATCTGCAGAATAAGACCGTCTTCCAATGATCTGAAATGGATTTTTAACGG
GAGAAAGGGATCGGCTGCGTTTAACTTTAAAAGAAAGTACCTCGTATCCC
GCCGGAACCAGTTTACAATTAGCATTTGGGAAATCGTGATCATTATAATT
AGNCGATCTGAAATGGCTTTTTAACGGGAGAAAGGGTTCGGCTGCGTTTA
ACTTTAAAAGAAAGTACCTCGTATCCCGCCGGAACCAGTTTACAATTAGC
ATTTGGGAAATCGTGATCATTATAATTAGGGGGTTCCATTAAACGATGGA
TCGTGTCATCGCTGACTTCCAAATGTAGCGCCGTTTTAACATGATTGCGT
ATGTCGGACAGAGTTACCCCGTTTGAGTACATTGTTGACGTTCTTCTTCT
CAAATGTGCACCAGAAGAATTTTgttcaatgaaattttgaacacACCCTA
CCAACTCAGGATGCAAGGATGCGTAGCTTGGACGACCTCGTTTGCgtttt
tctgaaaataaaaatattagaa
Run BLAST on NCBI

transcript from alignment at sc0002880:14..1349+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041449 ID=TCONS_00041449|Name=TCONS_00041449|organism=Clytia hemisphaerica|type=transcript|length=1336bp|location=Sequence derived from alignment at sc0002880:14..1349+ (Clytia hemisphaerica)
gtattTGACTGTTGTCACTGAAGAACCTGTCAACTTTAATTGGGTGACCG
TTATATTTCTTCCCATCCCAGAACCGAGCACACATCTCTACTGCATTGTC
TAGCACCTTCAACCAGCCTTTCTCGTCGTTTTCCTTAGGTTTCTCTCCCG
CAAGGTCATCAGGAAGCGTCACCGTGACTATCTTTGCGTTCAAGAAGGAC
CAGAGACGTTCAATTGGATTGAACCTGGACATACCTGGAGCATAGCACTG
GACAGTCAGCGTATCCAGCTGAAGCTCCTTCCAAAGCATGCCAAGACTCA
TCAAATTGCCGACACCCTTAACCGACCAATCAGGACCCCCGTCTGCGATC
AAAACCACATTCATGACCTGTTTTGTTCGCATTTCACGTTTgatcatttt
cttcaaaaaggaGGTGTGCATGATATTGGTCGTCTCAACTGACCTACAAG
AATGGACCTGCATATTCAAAGAGCCAGACCGTGGCCATTTCACTTTAGGC
CTGCCAACTTTGTCACTCATGAGACGTTTCTTTGGGATGACCACACAAGA
ATCTGCAGAATAAGACCGTCTTCCAATGATCTGAAATGGATTTTTAACGG
GAGAAAGGGATCGGCTGCGTTTAACTTTAAAAGAAAGTACCTCGTATCCC
GCCGGAACCAGTTTACAATTAGCATTTGGGAAATCGTGATCATTATAATT
AGNCGATCTGAAATGGCTTTTTAACGGGAGAAAGGGTTCGGCTGCGTTTA
ACTTTAAAAGAAAGTACCTCGTATCCCGCCGGAACCAGTTTACAATTAGC
ATTTGGGAAATCGTGATCATTATAATTAGGTGAGTCATTCTTCATGtgga
atgttcttattttagagTACCTTGAAACGGCCGGAATGCCaacattaatt
ttatttttattgtctACTGACATCATGAGAGTGTTCTCTGAATAAATTTC
AGCTAACTCGTTCACTAGGTTAACCTGGGAACAAGTGTAGTGAAAGTGTT
CATGCGTGTGTTTTTCTTTCGAATTGCTTTTGGGCGGAACCCTGGCATTA
ATCAGACCCTTATAATACTTAGATGTATTTGATTTCTTTCTAGGGGGTTC
CATTAAACGATGGATCGTGTCATCGCTGACTTCCAAATGTAGCGCCGTTT
TAACATGATTGCGTATGTCGGACAGAGTTACCCCGTTTGAGTACATTGTT
GACGTTCTTCTTCTCAAATGTGCACCAGAAGAATTTTgttcaatgaaatt
ttgaacacACCCTACCAACTCAGGATGCAAGGATGCGTAGCTTGGACGAC
CTCGTTTGCgtttttctgaaaataaaaatattagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025421XLOC_025421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041449-exon-sc0002880-1491911889:14..842TCONS_00041449-exon-sc0002880-1491911889:14..842Clytia hemisphaericaexon
TCONS_00041449-exon-sc0002880-1510915933:14..842TCONS_00041449-exon-sc0002880-1510915933:14..842Clytia hemisphaericaexon
TCONS_00041449-exon-sc0002880-1575043694:14..842TCONS_00041449-exon-sc0002880-1575043694:14..842Clytia hemisphaericaexon
TCONS_00041449-exon-sc0002880-1491911889:1107..1349TCONS_00041449-exon-sc0002880-1491911889:1107..1349Clytia hemisphaericaexon
TCONS_00041449-exon-sc0002880-1510915933:1107..1349TCONS_00041449-exon-sc0002880-1510915933:1107..1349Clytia hemisphaericaexon
TCONS_00041449-exon-sc0002880-1575043694:1107..1349TCONS_00041449-exon-sc0002880-1575043694:1107..1349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002880supercontigsc0002880:14..1349 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21993	2.16478	0.605106	1.09293	0.831583	0.613319	0.739944	0.692726	1.24713	3.47573	1.95754	2.82003	0.492135	0.0851811	0.676961	0.951943	0.185166	0.316315	0.131102	0.228648	0.198736	0.116324	4.52502	2.22836	6.13515	5.04216	0.450957	0.481274	2.46395	3.25419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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