TCONS_00041446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041446
Unique NameTCONS_00041446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1088

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041446 ID=TCONS_00041446|Name=TCONS_00041446|organism=Clytia hemisphaerica|type=transcript|length=1088bp
CTCCTTTGACACCATCACCACTCCCGTCCACAACGAGCCGTTCGAACGTG
ATGTTAAGTATCATCACACCTGTGGCAGCCGTCATCTTCCTTCTCCTCCT
GCTCATCGCTGGTTTCAAGTTATggcagaaaaagaaaattaaactttCCA
AAACGAAACAATGCAAAGAAGAACGATACGATTTGACCACATTGATGGCT
ATCCCGCTTGGTGATGATTCATTGAGACAGTTGAACGTAGAGAGAAGCTG
CATGTCTTCCGGGTCAGGCCTGCCGTTCCTCGTTCAACGCACGGTCGCCC
GCCAAATCGAACTGAAGGATTTGATTGGTAAAGGGCGGTATGGCGAGGTG
TGGCGTGGAACATGGCAGAGTGACTCGGTTGCCGTTAAAATCTTCAATTC
ACGTGATGAGGAGAGCTGGAAACGAGAGACGGATGTTTACAACACAGTTC
TCTTACGTCATGATAACATCTTGGGATACTTAGGATCAGACATCGCCACG
CGGAACGGAGTTACAGAGATGTGGCTCATCACTCATTTTCATGTTCACGG
TGCTCTGTATGATTACCTGAATGTAAACGCTTTAGATCTCCAACAAATGT
TGATCTTTGCACAATCAGCGGCCGCAGGGTTGGCTCATCTTCACGCAGAA
ATAAACGGACAGCAAGGAAAGCCAGCGATCGCTCACAGAGACATTAAAAC
GAAAAACATTTTAGTGAAAACGAATGGACAATGTTGTTTAAGTGATTTAG
GTCTTGCTGTTCTTCACAAAACATCAGAGAATAAACTAGACATTAATACA
CAGAACTATCGTGTAGGCACCAAAAGGTATATGGCTCCTGAGGTGTTAGA
TGAAACAATTTCGCGGACAAATTTCGAAGCCTTTAAAGCGGCTGATATTT
ATTCGTTCGGCCTTGTGTTGTGGGAAATTGCACGAAGAACCGAAATTGAT
GGTGTTGTGGAGGATTACCAACCACCGTTTTATGATGTTCTACCACCCGA
TCCTCCTTTTGATTTTGTCAAGAAAGTTGTGTTAGATGACAACTATCGTC
CCCAGATCCCCTCCACGTGGACGCAACACGAGGTTTGT
Run BLAST on NCBI

protein sequence of TCONS_00041446-protein

>TCONS_00041446-protein ID=TCONS_00041446-protein|Name=TCONS_00041446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
PLTPSPLPSTTSRSNVMLSIITPVAAVIFLLLLLIAGFKLWQKKKIKLSK
TKQCKEERYDLTTLMAIPLGDDSLRQLNVERSCMSSGSGLPFLVQRTVAR
QIELKDLIGKGRYGEVWRGTWQSDSVAVKIFNSRDEESWKRETDVYNTVL
LRHDNILGYLGSDIATRNGVTEMWLITHFHVHGALYDYLNVNALDLQQML
IFAQSAAAGLAHLHAEINGQQGKPAIAHRDIKTKNILVKTNGQCCLSDLG
LAVLHKTSENKLDINTQNYRVGTKRYMAPEVLDETISRTNFEAFKAADIY
SFGLVLWEIARRTEIDGVVEDYQPPFYDVLPPDPPFDFVKKVVLDDNYRP
QIPSTWTQHEVC
Run BLAST on NCBI

transcript from alignment at sc0002879:11018..12470-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041446 ID=TCONS_00041446|Name=TCONS_00041446|organism=Clytia hemisphaerica|type=transcript|length=1453bp|location=Sequence derived from alignment at sc0002879:11018..12470- (Clytia hemisphaerica)
CTCCTTTGACACCATCACCACTCCCGTCCACAACGAGCCGTTCGAACGTG
ATGTTAAGTATCATCACACCTGTGGCAGCCGTCATCTTCCTTCTCCTCCT
GCTCATCGCTGGTTTCAAGTTATGGCAGAAAAAGAAAATTAAACTTTCCA
AAACGAAACAATGCAAAGAAGAACGATACGATTTGACCACATTGATGGCT
ATCCCGCTTGGTGATGATTCATTGAGACAGTTGAACGTAGAGAGAAGCTG
CATGTCTTCCGGGTCAGGCCTGCCGTTCCTCGTTCAACGCACGGTCGCCC
GCCAAATCGAACTGAAGGATTTGATTGGTAAAGGGCGGTATGGCGAGGTG
TGGCGTGGAACATGGCAGAGTGACTCGGTTGCCGTTAAAATCTTCAATTC
ACGTGATGAGGAGAGCTGGAAACGAGAGACGGATGTTTACAACACAGTTC
TCTTACGTCATGATAACATCTTGGGATACTTAGGATCAGACATCGCCACG
CGGAACGGAGTTACAGAGATGTGGCTCATCACTCATTTTCATGTTCACGG
TGCTCTGTATGATTACCTGAATGTAAACGCTTTAGATCTCCAACAAATGT
TGATCTTTGCACAATCAGCGGCCGCAGGGTTGGCTCATCTTCACGCAGAA
ATAAACGGACAGCAAGGAAAGCCAGCGATCGCTCACAGAGACATTAAAAC
GAAAAACATTTTAGTGAAAACGAATGGACAATGTTGTTTAAGTGATTTAG
GTCTTGCTGTTCTTCACAAAACATCAGAGAATAAACTAGACATTAATACA
CAGAACTATCGTGTAGGCACCAAAAGGTATATGGCTCCTGAGGTGTTAGA
TGAAACAATTTCGCGGACAAATTTCGAAGCCTTTAAAGCGGCTGATATTT
ATTCGTTCGGCCTTGTGTTGTGGGAAATTGCACGAAGAACCGAAATTGAT
GGTAAGAACCTCACTCATGGCTTAAAACTCAGTGAATATTGATATCCTAA
TCATTTTTGTCGACACCCCTCACTTTCAGTTGAACAGACTGATTGCTAAC
CTTGTCACAACATACAGTCTCTAATTCGAATCTCTATTATTCGAATCTTT
CTGTAATTCGAACTAAAATATTGGTCTCCTGAGCTGGAAAGTGGTTTAAA
GTATTCTCTGTAATTCGAAACTTTCTCTAATTGAAATGGAAATTTAAAAA
AACCCTAAGGTGGTCGACATTACACCTCTTTGACGTAGGGGATGTAGACT
GTTTCTGGGATAGCCCATTCAGCGGATAACGATAGAAACACTCAAAAGAC
ATTTTCTTTGTTGTAGGTGTTGTGGAGGATTACCAACCACCGTTTTATGA
TGTTCTACCACCCGATCCTCCTTTTGATTTTGTCAAGAAAGTTGTGTTAG
ATGACAACTATCGTCCCCAGATCCCCTCCACGTGGACGCAACACGAGGTT
TGT

Coding sequence (CDS) from alignment at sc0002879:11018..12470-

>TCONS_00041446 ID=TCONS_00041446|Name=TCONS_00041446|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0002879:11018..12470- (Clytia hemisphaerica)
GTGTTGTGGAGGATTACCAACCACCGTTTTATGATGTTCTACCACCCGAT
CCTCCTTTTGATTTTGTCAAGAAAGTTGTGTTAGATGACAACTATCGTCC
CCAGATCCCCTCCACGTGGACGCAACACGAGGTTTGTCCTTTGACACCAT
CACCACTCCCGTCCACAACGAGCCGTTCGAACGTGATGTTAAGTATCATC
ACACCTGTGGCAGCCGTCATCTTCCTTCTCCTCCTGCTCATCGCTGGTTT
CAAGTTATGGCAGAAAAAGAAAATTAAACTTTCCAAAACGAAACAATGCA
AAGAAGAACGATACGATTTGACCACATTGATGGCTATCCCGCTTGGTGAT
GATTCATTGAGACAGTTGAACGTAGAGAGAAGCTGCATGTCTTCCGGGTC
AGGCCTGCCGTTCCTCGTTCAACGCACGGTCGCCCGCCAAATCGAACTGA
AGGATTTGATTGGTAAAGGGCGGTATGGCGAGGTGTGGCGTGGAACATGG
CAGAGTGACTCGGTTGCCGTTAAAATCTTCAATTCACGTGATGAGGAGAG
CTGGAAACGAGAGACGGATGTTTACAACACAGTTCTCTTACGTCATGATA
ACATCTTGGGATACTTAGGATCAGACATCGCCACGCGGAACGGAGTTACA
GAGATGTGGCTCATCACTCATTTTCATGTTCACGGTGCTCTGTATGATTA
CCTGAATGTAAACGCTTTAGATCTCCAACAAATGTTGATCTTTGCACAAT
CAGCGGCCGCAGGGTTGGCTCATCTTCACGCAGAAATAAACGGACAGCAA
GGAAAGCCAGCGATCGCTCACAGAGACATTAAAACGAAAAACATTTTAGT
GAAAACGAATGGACAATGTTGTTTAAGTGATTTAGGTCTTGCTGTTCTTC
ACAAAACATCAGAGAATAAACTAGACATTAATACACAGAACTATCGTGTA
GGCACCAAAAGGTATATGGCTCCTGAGGTGTTAGATGAAACAATTTCGCG
GACAAATTTCGAAGCCTTTAAAGCGGCTGATATTTATTCGTTCGGCCTTG
TGTTGTGGGAAATTGCACGAAGAACCGAAATTGATGGTGTTGTGGAGGAT
TACCAACCACCGTTTTATGATGTTCTACCACCCGATCCTCCTTTTGATTT
TGTCAAGAAAGTTGTGTTAGATGACAACTATCGTCCCCAGATCCCCTCCA
CGTGGACGCAACACGAGGTTTGTCCTTTGACACCATCACCACTCCCGTCC
ACAACGAGCCGTTCGAACGTGATGTTAAGTATCATCACACCTGTGGCAGC
CGTCATCTTCCTTCTCCTCCTGCTCATCGCTGGTTTCAAGTTATGGCAGA
AAAAGAAAATTAAACTTTCCAAAACGAAACAATGCAAAGAAGAACGATAC
GATTTGACCACATTGATGGCTATCCCGCTTGGTGATGATTCATTGAGACA
GTTGAACGTAGAGAGAAGCTGCATGTCTTCCGGGTCAGGCCTGCCGTTCC
TCGTTCAACGCACGGTCGCCCGCCAAATCGAACTGAAGGATTTGATTGGT
AAAGGGCGGTATGGCGAGGTGTGGCGTGGAACATGGCAGAGTGACTCGGT
TGCCGTTAAAATCTTCAATTCACGTGATGAGGAGAGCTGGAAACGAGAGA
CGGATGTTTACAACACAGTTCTCTTACGTCATGATAACATCTTGGGATAC
TTAGGATCAGACATCGCCACGCGGAACGGAGTTACAGAGATGTGGCTCAT
CACTCATTTTCATGTTCACGGTGCTCTGTATGATTACCTGAATGTAAACG
CTTTAGATCTCCAACAAATGTTGATCTTTGCACAATCAGCGGCCGCAGGG
TTGGCTCATCTTCACGCAGAAATAAACGGACAGCAAGGAAAGCCAGCGAT
CGCTCACAGAGACATTAAAACGAAAAACATTTTAGTGAAAACGAATGGAC
AATGTTGTTTAAGTGATTTAGGTCTTGCTGTTCTTCACAAAACATCAGAG
AATAAACTAGACATTAATACACAGAACTATCGTGTAGGCACCAAAAGGTA
TATGGCTCCTGAGGTGTTAGATGAAACAATTTCGCGGACAAATTTCGAAG
CCTTTAAAGCGGCTGATATTTATTCGTTCGGCCTTGTGTTGTGGGAAATT
GCACGAAGAACCGAAATTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025418XLOC_025418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041446-proteinTCONS_00041446-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041446-exon-sc0002879-1575043694:11520..12470TCONS_00041446-exon-sc0002879-1575043694:11520..12470Clytia hemisphaericaexon
TCONS_00041446-exon-sc0002879-1575043694:11018..11154TCONS_00041446-exon-sc0002879-1575043694:11018..11154Clytia hemisphaericaexon
TCONS_00041446-exon-sc0002879-1510915933:11520..12470TCONS_00041446-exon-sc0002879-1510915933:11520..12470Clytia hemisphaericaexon
TCONS_00041446-exon-sc0002879-1510915933:11018..11154TCONS_00041446-exon-sc0002879-1510915933:11018..11154Clytia hemisphaericaexon
TCONS_00041446-exon-sc0002879-1491911889:11520..12470TCONS_00041446-exon-sc0002879-1491911889:11520..12470Clytia hemisphaericaexon
TCONS_00041446-exon-sc0002879-1491911889:11018..11154TCONS_00041446-exon-sc0002879-1491911889:11018..11154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002879supercontigsc0002879:11018..12470 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.22893	7.78418	14.362	14.0938	42.3974	32.4629	35.8997	38.9158	18.7385	32.8444	25.3049	19.8306	39.385	43.7445	45.4671	57.2564	51.4308	49.5302	33.2567	35.4507	39.6975	43.5134	43.2149	49.1701	49.5931	53.5985	147.328	101.825	130.279	139.933
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR003605GS_dom
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004675transmembrane receptor protein serine/threonine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0016020 membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004675 transmembrane receptor protein serine/threonine kinase activity
Blast
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BLAST of TCONS_00041446 vs. Swiss-Prot (Human)
Match: ACVR1 (Activin receptor type-1 OS=Homo sapiens GN=ACVR1 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 8.211e-117
Identity = 184/294 (62.59%), Postives = 232/294 (78.91%), Query Frame = 3 
Query:  192 LMAIPLGDDSLRQLNVERSCMS-SGSGLPFLVQRTVARQIELKDLIGKGRYGEVWRGTWQSDSVAVKIFNSRDEESWKRETDVYNTVLLRHDNILGYLGSDIATRNGVTEMWLITHFHVHGALYDYLNVNALDLQQMLIFAQSAAAGLAHLHAEINGQQGKPAIAHRDIKTKNILVKTNGQCCLSDLGLAVLHKTSENKLDINTQNYRVGTKRYMAPEVLDETISRTNFEAFKAADIYSFGLVLWEIARRTEIDGVVEDYQXXXXXXXXXXXXXXXXXXXXLDDNYRPQIPSTW 1070
            L+   +GD +L  L ++ SC S SGSGLPFLVQRTVARQI L + +GKGRYGEVWRG+WQ ++VAVKIF+SRDE+SW RET++YNTV+LRH+NILG++ SD+ +R+  T++WLITH+H  G+LYDYL +  LD    L    S A+GLAHLH EI G QGKPAIAHRD+K+KNILVK NGQCC++DLGLAV+H  S N+LD+   N RVGTKRYMAPEVLDETI    F+++K  DI++FGLVLWE+ARR   +G+VEDY+PPFYDV+P DP F+ ++KVV  D  RP IP+ W
Sbjct:  170 LITTNVGDSTLADL-LDHSCTSGSGSGLPFLVQRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVG-NNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRW 461
The following BLAST results are available for this feature:
BLAST of TCONS_00041446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACVR18.211e-11762.59Activin receptor type-1 OS=Homo sapiens GN=ACVR1 P... [more]
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