TCONS_00041444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041444
Unique NameTCONS_00041444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041444 ID=TCONS_00041444|Name=TCONS_00041444|organism=Clytia hemisphaerica|type=transcript|length=831bp
ccagcgctagcgagtgggcctttaaagagagtctcactattatttttttc
cgtgtttccttctgtctgtccgtttttGGAGAAACAGCGCCTCAAGATGA
AGCGCGCAAAGTTTTTGATCAGTACGGGATATTATCAAGTTCATCCCGTT
TAGTCGGCGTGGTGCGATCGAGCGACGTTAATAAATTTAGCTCACGTACT
CTGATTAAACCAAAGGAAGCAGATTAATTCGAGAGCTGTCAACGTTTTTA
GATATGAAAATTACTGCACTGACCGTTTCAACAGAGTTTTATAATTTGTT
ATTCCAAAGATTCATTTCTTAATTCTTGTATCAAGAAGAACCCATTCATA
CAGAAACACAACTGATAAAATTTGCAAGAaattgaaaggtaaatctttTA
TTATAAAGATGCATATTTTGCTCTCTAAAGCACCTTGAGTTGACCTGCAG
CAGTAGAGATTACTTCTAGTTGTTAGGGAATTTCAATCAAACGTTAATAG
AACATTGATTATTCATGTTTTCAAAATGGAAATATTGAATCACCGGTGAG
TGTCAGATGAGATGTATAAATGTCGTTCAACAAGTTATCTCTTCACTTTA
CTTTATCAGTGGTGTCCAATCAAAacaactttgaacaaaaattgcaatca
aacGCAATTGATTGATGCTGCGATCAAAGGCGATCGAACAAAGGACCCTG
CCAGCGCGGGTGCATGTCAccagtccgacactttctagtacgacagtaaa
atagtccgaatctataaaataaatttaaaatttggaagtatttttttccg
acgtcacttttgtccaaaaacgaaagatttt
Run BLAST on NCBI

transcript from alignment at sc0002878:15663..16493

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041444 ID=TCONS_00041444|Name=TCONS_00041444|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0002878:15663..16493 (Clytia hemisphaerica)
aaaatctttcgtttttggacaaaagtgacgtcggaaaaaaatacttccaa
attttaaatttattttatagattcggactattttactgtcgtactagaaa
gtgtcggactggTGACATGCACCCGCGCTGGCAGGGTCCTTTGTTCGATC
GCCTTTGATCGCAGCATCAATCAATTGCgtttgattgcaatttttgttca
aagttgtTTTGATTGGACACCACTGATAAAGTAAAGTGAAGAGATAACTT
GTTGAACGACATTTATACATCTCATCTGACACTCACCGGTGATTCAATAT
TTCCATTTTGAAAACATGAATAATCAATGTTCTATTAACGTTTGATTGAA
ATTCCCTAACAACTAGAAGTAATCTCTACTGCTGCAGGTCAACTCAAGGT
GCTTTAGAGAGCAAAATATGCATCTTTATAATAaaagatttacctttcaa
ttTCTTGCAAATTTTATCAGTTGTGTTTCTGTATGAATGGGTTCTTCTTG
ATACAAGAATTAAGAAATGAATCTTTGGAATAACAAATTATAAAACTCTG
TTGAAACGGTCAGTGCAGTAATTTTCATATCTAAAAACGTTGACAGCTCT
CGAATTAATCTGCTTCCTTTGGTTTAATCAGAGTACGTGAGCTAAATTTA
TTAACGTCGCTCGATCGCACCACGCCGACTAAACGGGATGAACTTGATAA
TATCCCGTACTGATCAAAAACTTTGCGCGCTTCATCTTGAGGCGCTGTTT
CTCCaaaaacggacagacagaaggaaacacggaaaaaaataatagtgaga
ctctctttaaaggcccactcgctagcgctgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025416XLOC_025416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041444-exon-sc0002878-1491911889:15663..16493TCONS_00041444-exon-sc0002878-1491911889:15663..16493Clytia hemisphaericaexon
TCONS_00041444-exon-sc0002878-1510915933:15663..16493TCONS_00041444-exon-sc0002878-1510915933:15663..16493Clytia hemisphaericaexon
TCONS_00041444-exon-sc0002878-1575043694:15663..16493TCONS_00041444-exon-sc0002878-1575043694:15663..16493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002878supercontigsc0002878:15663..16493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228153	0.222485	0.129163	0.252732	1.07687	0.607826	1.03095	0.757623	0.38452	0.238145	0.115575	0.341884	0.682817	0.590927	0.521877	0.521362	0.173115	0.219437	0.485063	0.253792	0.165443	0.403487	0.0653988	0.178658	0.857351	1.69429	0.159436	0.417343	0	0.197022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top