TCONS_00041443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041443
Unique NameTCONS_00041443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5085

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041443 ID=TCONS_00041443|Name=TCONS_00041443|organism=Clytia hemisphaerica|type=transcript|length=5085bp
AtgcatatttcaaaagttatataCAACTGTTTATATAacagaaaaattga
agaaaaatcaCAGGGCGTCTCAAATCTAAAAATTAACAACCAGGCCATTT
ATTAAGAGTACAGTTCTTTCAAAAATCGTaatttcgtctttttttatttt
ttaggtcCATCGATCCTTCTTGCGTACGGCGGAAGGGTCAGAAATATTTC
AACTTAGATAACTTAGTATACTTGGCTTACTTGGTATACCTAGATCACAT
AGCGTAGCGTACTACTTGGCATACTCAGATCAATCGGCTTACTCAGATCA
CTTACTACTTGAATACTCAAATCACTTGGTTTATATTACGAAACATTCGG
CAAACTAAAGCTACTTAACTTACTCAGCTCACTCCGCTTACataatttaa
tattttgaaaaagaaaaatcaatctgttataattttgttctttatttcat
tGTCTCCTGCCCATTTTACCCACTAACAGTTTTTATAATTATGATTTCTA
CCGATGCATATCGAGTTTCGATTGGTAATTTTAACAACACCCGCCAACTA
GACCTCCGCTCAATATATCGTCATCTTGACATAGATTCGTCTTTATCTAG
TAGATGGTTTTCCCAATTTTTAAAGGCATCTAGATTAGTATCTATAGCTC
TCTTCCTAAGCATACTTCTCATATCATGCGGAGATATTGAAACTAACCCT
GGACCTTTTAACTGCCATAAAGTTGTCCAAGCATCCTTTAATCAGGGGAA
TGTGGCCATTTTCGGACCTCAAGCGGGCACCCAATGCATGTACATGGCCT
CCACCGCCATAATTTATTCCTATTTTAAACTTCCAATGTACTGGGAAAAA
TCCGATTTGGACGCTATTCTTAGATTAGGTAACGAGTTGTACCGCGGGCT
TGGATATATTGACGAATACATTGATTTGACGGACCTACCCTCACAATTAA
ATATCGAAAGCaatattattgaatttttacgAACGCCCGTGACCGTTTCA
GTGTTAGATAGAAACAGTATTGACTTCTTAAACCCCCCACCCACATATAA
CTATGGAATTTTTGTAGCTTGCAGTAATGGAACTGCCTTCATGTTTGACA
ACGGTCGATATTATGTCTTTGATTCCCACAACCGTACCTCCGAGGGCATG
TGCTGTTACAACAATACAGGAACATCCGTACTGCTCGAGTTCAATACCAA
ACGGGATCTCGAGGAATATCTAAAAGAGTTCTACTTGCAACAGTTTCGGC
ACGATCTAGTCGGCTTTGAAGTTCAGTATATTAAGATGTTCATTCCCGAC
GATTCTCTGAACTCCTTAAAACAAAGTCTCCGTTGTTATGGCTACATTGA
AAAGAGAAAACGACCTATTGATAATGATAGTAATGTGCAACCTGGACCGT
CTAAAATATACAAATTAAGGTCAAAGaccaacaaaattaattttaatgaa
aacttaGTAGACCAAGAGGGAACTAATGCGACTGAAATAACtgtaaaaaa
actcaaaaaagatcgGACTAGGAAAGCTGAGGCTAGAGCTGGTGAAACAG
AAAGagagaaacaaaaaagaaaaaatcaagatcGCTTAAGAGCTACTAAT
GCCCGTGTAAACATGTCTGATgaaaaaaagcatcaaaatagACTGAAAGG
TCGATCACAAAAAGCTACCTCTAAAGCAAAAATGACGGAAgaagaaaaag
ctgaaaataggAATAGAGAGAAATCACGAAAAGCTGCAGCTAGTGCAAAA
ATGACAGAGGaacaaaaaactaaaactaGAGCAAAAAACCGCACTTCGAT
GGCTAAAGCAAGGGCAAATCTAACAGAAGAACAAAAGCTTGAAATAAGAG
AGAAAGACCGATTACGAAAGGCAAAAAGGTGTGCAAATTTaacagaagag
aaaaaaaaagcaaGGAATGAAAaggacaaaaaaatcaaaacaactagTAC
AACAGCTTTGCCTCATAAAGACAGTATGATGCGCCGAGTAAAAACGTTCA
AAACGGACATTCGAAAAGGTCCTTTCTTTATTTGCGTGATTTGTAACAGA
CTTATGTATAGGGTTTCCGTAATTTTGTTTAATGAAAACAAATATCACGA
TGTCGATGAAGACGTCTTTTCTTATCGTGTTCTCAGTTTCGACAATAAAG
AATACATATGCAAAACATGCGACAAAAAATTactcaagaaaaaagttcct
cCTCAAGCAGTGGCTAATGCCTTGCAAATCACCAACTTACCAGAAAGGTT
TTCGGATataagaaaattggaaaaaatcatTATTGCAAAACGTTTACTGT
TTAAAAGAATAACAATTATGAGTAAAGGACAAGCCCCTAAAATGAAAGGC
GCTATATGTAACGTACCAATAAAAGCAGATGATATTTGTAATATATTACC
CCGCGGAATGGACAATAATGGGGTAGTGAGAGTCgccctgaaaaagaaaa
tgagctTTAAGTCTAATGTCTACTTTGAACCTGTACGGCCACAGTTTGTA
AGAGAGgttttgatttactttaaaAATAACAACCCTCTGTACTCTGACAT
TAAAATCAACTTAGATTCCATCCCCGCATGTTGGATAGATATTATTAATA
ATGATGATCAGGATGAAACTGATGATGAAATCGATTTTGTGAGAGAAGGG
GAATCCAAGGAAACAAAGCCtgctgaaaatgaagaagaagaggatAATCC
TTTAGATCATTTGCGCGTACCTGCTTCTGAAACAGTTTTAGTTCCCGAGC
TTCCGTACCAGGTTATTGACGATTCTAATGTGACTATAGCACCCGGAGAA
GACAAAAAGCCCCTACCCATAATTTGTGATGAAGATTGCGAAATGCTTGC
TCATCCTCATTTATTTCCAACTGGCGAGTCAGGGTATAACCATGAAAGAG
ATGAAAAACTAAGTCCAACTAGATATTTCAATCAACGTCTTTTAAACTAC
AGTCTAAAGTTTTCCTCGGATAGTGGTTACATATTCTATGCTCAATCATT
ATTACAACACTTAAACTTAAATAATAGTATCAATACAGCTCTGAAAAAGA
TTCAAACGGAAGGGCTGACAGCAGGTCAGTTGTCTCAGAATTTCAAGGAA
ACGATTTCAAACCTAGTTGCTAATGACAATGCGTATAGctttatgaataa
tttgaaaggTACTCCCGCGTATTGGAAAAGACTTCTTTACGAAGTTCTCG
CTATGGTAAAACAATTAGGACTGCCGACTTTTTTTCATACTTTGTCATGT
GCTGATTTAAAATGGCCAGAAATAGTTGACATTATCCAAAAAATGAAAGG
GAAAGAAATGACAGAAGATCAAATTAGAGCTTTGAGTTACATGGAAAGAA
CACAGATTCTGCAATCGAACCCTGTTGTTTTAGCAAGACATTTTCAATAT
CGTCTTGAGTGTTATTTTAAACATATTATCGCAAAAGGAGCATTAGGTGG
TAAGCTAAAACATCACGTTATCAGGATTGAATTTCAAGCTAGAGGTAGTG
CTCACGCCCATTGTCTTATCTGGATCGAGAACGCCCCTATACTAACTTAT
GAAACCATTGATGAATATACTGAGTTCGTTGATAAATTTGTAAAATGTGA
CTTTCCAGAAGATACAAATAGTGAACTGTATGATTTAGTAAAAACGTATC
AGATACATCGTCATTCAAAATCATGTCGTCCTTTTAAGAATCGGCCATGT
AGATATCTTTTCGGAAagttttttacagaaaaaacaATCATAGCTGTCCC
ATTAGATGAGAACCTACCAAACAAAGAAGAGATCCTTAATACAAGGAAAG
CTATTTTATCTCCAGTTAAACAGTATATTGATAAAAACTTTGATCCAAGA
TTTAATAACGTGCATGATCCAGCAAAGGAGAACTATAGAGAACCAAAATC
AATAAACGAAATATTAGAAGAGTTGGGAATTGAAAAACAAGTTTATTACG
AAAACCTAGCTATTTCTACAGATAAAAGCTTTCAAATACATTACAAACGA
TCAACATCCGCCTGTTTTGTGAATAACTATTTCGAGGAAGGATTGCGTGC
TTGGGAAGCTAACATGGATATTCAGCCTGTCATAGATTATCATAAATGTG
TTTCTTATATGTGCGCTTACATTTCCAAATCCGAAGACGAATCAACAGAA
GCAATGAAACAAGCCGCGAAAGAAGCATTAGAATCCAACCAATGTCTTAG
AGAAAAGATGAAATCAATATCAAGAGCTTACAGAACACATAGAGAGATGT
CTATTCAAGAAGCTGTTTCTATTGTACTTCCAGAAATTTGGCTTAGAAGA
ACATCTCCAGCAGTCATTTTTGCGAACAGTAacttgccagaaaaccgtta
CCGAGTATGCAAAAGTCAAGATGAGATTTCAAACATGGATGAGGAAGAta
caaatgttttcaaaaaaaatatgttagATCGATATATAGACAGACCAACT
CCAAGGTGTTACAAAGGTAAATATCCTTCATTAGAACATATTTGCTACGC
AGAATTTTTGGCAAATTATTCTTTGGATTCTAAAAACAAGGAAGTGGAAA
ATGACTACCAGCCTGAAATTCTTGAGGAAATAGATCAGGCAGAAGCAGTC
GATCTTCGCTTACCATCGACATTTCCCTTAAAATCGAATTCCAAAGAACG
CCTGAAGTTACGAAAAATTAAATGCGTTCTGAGATACCATGTACCGAGCA
GAGAAAAAAAACCAGAACGCTATGCCCACCATTTGTTGTTCATGTTTTAT
CACTTTAGAAACGAAGAAGAGTTAAAGGGCCCACTAGGGACATATACAGA
AAAACTATTATCACCAGAAGTATTGGatgaaataaatagaaacaaAGCAG
TCTTTGAACCTTTTGCCGATGTCGTTGATGATGCAATgttgaatttccat
gaaaaccCAAGAGGTTATGATATTTACGGAGAACAAGAAAATGACGATGT
TCGGGAGGAAGAAGCAAACAATGCGAGTGAAGAAGAAACAGACAACGAAA
TTGAAAATGACCATAATGATTATCGCGGAGGTGACTCTGTACAGATAATT
GAACCACTGATATCAGATGACGAGTTAAATTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00041443-protein

>TCONS_00041443-protein ID=TCONS_00041443-protein|Name=TCONS_00041443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1531bp
MISTDAYRVSIGNFNNTRQLDLRSIYRHLDIDSSLSSRWFSQFLKASRLV
SIALFLSILLISCGDIETNPGPFNCHKVVQASFNQGNVAIFGPQAGTQCM
YMASTAIIYSYFKLPMYWEKSDLDAILRLGNELYRGLGYIDEYIDLTDLP
SQLNIESNIIEFLRTPVTVSVLDRNSIDFLNPPPTYNYGIFVACSNGTAF
MFDNGRYYVFDSHNRTSEGMCCYNNTGTSVLLEFNTKRDLEEYLKEFYLQ
QFRHDLVGFEVQYIKMFIPDDSLNSLKQSLRCYGYIEKRKRPIDNDSNVQ
PGPSKIYKLRSKTNKINFNENLVDQEGTNATEITVKKLKKDRTRKAEARA
GETEREKQKRKNQDRLRATNARVNMSDEKKHQNRLKGRSQKATSKAKMTE
EEKAENRNREKSRKAAASAKMTEEQKTKTRAKNRTSMAKARANLTEEQKL
EIREKDRLRKAKRCANLTEEKKKARNEKDKKIKTTSTTALPHKDSMMRRV
KTFKTDIRKGPFFICVICNRLMYRVSVILFNENKYHDVDEDVFSYRVLSF
DNKEYICKTCDKKLLKKKVPPQAVANALQITNLPERFSDIRKLEKIIIAK
RLLFKRITIMSKGQAPKMKGAICNVPIKADDICNILPRGMDNNGVVRVAL
KKKMSFKSNVYFEPVRPQFVREVLIYFKNNNPLYSDIKINLDSIPACWID
IINNDDQDETDDEIDFVREGESKETKPAENEEEEDNPLDHLRVPASETVL
VPELPYQVIDDSNVTIAPGEDKKPLPIICDEDCEMLAHPHLFPTGESGYN
HERDEKLSPTRYFNQRLLNYSLKFSSDSGYIFYAQSLLQHLNLNNSINTA
LKKIQTEGLTAGQLSQNFKETISNLVANDNAYSFMNNLKGTPAYWKRLLY
EVLAMVKQLGLPTFFHTLSCADLKWPEIVDIIQKMKGKEMTEDQIRALSY
MERTQILQSNPVVLARHFQYRLECYFKHIIAKGALGGKLKHHVIRIEFQA
RGSAHAHCLIWIENAPILTYETIDEYTEFVDKFVKCDFPEDTNSELYDLV
KTYQIHRHSKSCRPFKNRPCRYLFGKFFTEKTIIAVPLDENLPNKEEILN
TRKAILSPVKQYIDKNFDPRFNNVHDPAKENYREPKSINEILEELGIEKQ
VYYENLAISTDKSFQIHYKRSTSACFVNNYFEEGLRAWEANMDIQPVIDY
HKCVSYMCAYISKSEDESTEAMKQAAKEALESNQCLREKMKSISRAYRTH
REMSIQEAVSIVLPEIWLRRTSPAVIFANSNLPENRYRVCKSQDEISNMD
EEDTNVFKKNMLDRYIDRPTPRCYKGKYPSLEHICYAEFLANYSLDSKNK
EVENDYQPEILEEIDQAEAVDLRLPSTFPLKSNSKERLKLRKIKCVLRYH
VPSREKKPERYAHHLLFMFYHFRNEEELKGPLGTYTEKLLSPEVLDEINR
NKAVFEPFADVVDDAMLNFHENPRGYDIYGEQENDDVREEEANNASEEET
DNEIENDHNDYRGGDSVQIIEPLISDDELNF
Run BLAST on NCBI

transcript from alignment at sc0002878:7831..12915

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041443 ID=TCONS_00041443|Name=TCONS_00041443|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at sc0002878:7831..12915 (Clytia hemisphaerica)
CTGAAATTTAACTCGTCATCTGATATCAGTGGTTCAATTATCTGTACAGA GTCACCTCCGCGATAATCATTATGGTCATTTTCAATTTCGTTGTCTGTTT CTTCTTCACTCGCATTGTTTGCTTCTTCCTCCCGAACATCGTCATTTTCT TGTTCTCCGTAAATATCATAACCTCTTGggttttcatggaaattcaacAT TGCATCATCAACGACATCGGCAAAAGGTTCAAAGACTGCTttgtttctat ttatttcatCCAATACTTCTGGTGATAATAGTTTTTCTGTATATGTCCCT AGTGGGCCCTTTAACTCTTCTTCGTTTCTAAAGTGATAAAACATGAACAA CAAATGGTGGGCATAGCGTTCTGGTTTTTTTTCTCTGCTCGGTACATGGT ATCTCAGAACGCATTTAATTTTTCGTAACTTCAGGCGTTCTTTGGAATTC GATTTTAAGGGAAATGTCGATGGTAAGCGAAGATCGACTGCTTCTGCCTG ATCTATTTCCTCAAGAATTTCAGGCTGGTAGTCATTTTCCACTTCCTTGT TTTTAGAATCCAAAGAATAATTTGCCAAAAATTCTGCGTAGCAAATATGT TCTAATGAAGGATATTTACCTTTGTAACACCTTGGAGTTGGTCTGTCTAT ATATCGATctaacatattttttttgaaaacatttgtaTCTTCCTCATCCA TGTTTGAAATCTCATCTTGACTTTTGCATACTCGGtaacggttttctggc aagtTACTGTTCGCAAAAATGACTGCTGGAGATGTTCTTCTAAGCCAAAT TTCTGGAAGTACAATAGAAACAGCTTCTTGAATAGACATCTCTCTATGTG TTCTGTAAGCTCTTGATATTGATTTCATCTTTTCTCTAAGACATTGGTTG GATTCTAATGCTTCTTTCGCGGCTTGTTTCATTGCTTCTGTTGATTCGTC TTCGGATTTGGAAATGTAAGCGCACATATAAGAAACACATTTATGATAAT CTATGACAGGCTGAATATCCATGTTAGCTTCCCAAGCACGCAATCCTTCC TCGAAATAGTTATTCACAAAACAGGCGGATGTTGATCGTTTGTAATGTAT TTGAAAGCTTTTATCTGTAGAAATAGCTAGGTTTTCGTAATAAACTTGTT TTTCAATTCCCAACTCTTCTAATATTTCGTTTATTGATTTTGGTTCTCTA TAGTTCTCCTTTGCTGGATCATGCACGTTATTAAATCTTGGATCAAAGTT TTTATCAATATACTGTTTAACTGGAGATAAAATAGCTTTCCTTGTATTAA GGATCTCTTCTTTGTTTGGTAGGTTCTCATCTAATGGGACAGCTATGATt gttttttctgtaaaaaactTTCCGAAAAGATATCTACATGGCCGATTCTT AAAAGGACGACATGATTTTGAATGACGATGTATCTGATACGTTTTTACTA AATCATACAGTTCACTATTTGTATCTTCTGGAAAGTCACATTTTACAAAT TTATCAACGAACTCAGTATATTCATCAATGGTTTCATAAGTTAGTATAGG GGCGTTCTCGATCCAGATAAGACAATGGGCGTGAGCACTACCTCTAGCTT GAAATTCAATCCTGATAACGTGATGTTTTAGCTTACCACCTAATGCTCCT TTTGCGATAATATGTTTAAAATAACACTCAAGACGATATTGAAAATGTCT TGCTAAAACAACAGGGTTCGATTGCAGAATCTGTGTTCTTTCCATGTAAC TCAAAGCTCTAATTTGATCTTCTGTCATTTCTTTCCCTTTCATTTTTTGG ATAATGTCAACTATTTCTGGCCATTTTAAATCAGCACATGACAAAGTATG AAAAAAAGTCGGCAGTCCTAATTGTTTTACCATAGCGAGAACTTCGTAAA GAAGTCTTTTCCAATACGCGGGAGTAcctttcaaattattcataaagCTA TACGCATTGTCATTAGCAACTAGGTTTGAAATCGTTTCCTTGAAATTCTG AGACAACTGACCTGCTGTCAGCCCTTCCGTTTGAATCTTTTTCAGAGCTG TATTGATACTATTATTTAAGTTTAAGTGTTGTAATAATGATTGAGCATAG AATATGTAACCACTATCCGAGGAAAACTTTAGACTGTAGTTTAAAAGACG TTGATTGAAATATCTAGTTGGACTTAGTTTTTCATCTCTTTCATGGTTAT ACCCTGACTCGCCAGTTGGAAATAAATGAGGATGAGCAAGCATTTCGCAA TCTTCATCACAAATTATGGGTAGGGGCTTTTTGTCTTCTCCGGGTGCTAT AGTCACATTAGAATCGTCAATAACCTGGTACGGAAGCTCGGGAACTAAAA CTGTTTCAGAAGCAGGTACGCGCAAATGATCTAAAGGATTatcctcttct tcttcattttcagcaGGCTTTGTTTCCTTGGATTCCCCTTCTCTCACAAA ATCGATTTCATCATCAGTTTCATCCTGATCATCATTATTAATAATATCTA TCCAACATGCGGGGATGGAATCTAAGTTGATTTTAATGTCAGAGTACAGA GGGTTGTTATTtttaaagtaaatcaaaacCTCTCTTACAAACTGTGGCCG TACAGGTTCAAAGTAGACATTAGACTTAAagctcattttctttttcaggg cGACTCTCACTACCCCATTATTGTCCATTCCGCGGGGTAATATATTACAA ATATCATCTGCTTTTATTGGTACGTTACATATAGCGCCTTTCATTTTAGG GGCTTGTCCTTTACTCATAATTGTTATTCTTTTAAACAGTAAACGTTTTG CAATAatgattttttccaattttcttatATCCGAAAACCTTTCTGGTAAG TTGGTGATTTGCAAGGCATTAGCCACTGCTTGAGgaggaacttttttctt gagtAATTTTTTGTCGCATGTTTTGCATATGTATTCTTTATTGTCGAAAC TGAGAACACGATAAGAAAAGACGTCTTCATCGACATCGTGATATTTGTTT TCATTAAACAAAATTACGGAAACCCTATACATAAGTCTGTTACAAATCAC GCAAATAAAGAAAGGACCTTTTCGAATGTCCGTTTTGAACGTTTTTACTC GGCGCATCATACTGTCTTTATGAGGCAAAGCTGTTGTActagttgttttg atttttttgtcctTTTCATTCCttgctttttttttctcttctgttAAATT TGCACACCTTTTTGCCTTTCGTAATCGGTCTTTCTCTCTTATTTCAAGCT TTTGTTCTTCTGTTAGATTTGCCCTTGCTTTAGCCATCGAAGTGCGGTTT TTTGCTCtagttttagttttttgttCCTCTGTCATTTTTGCACTAGCTGC AGCTTTTCGTGATTTCTCTCTATTcctattttcagctttttcttcTTCCG TCATTTTTGCTTTAGAGGTAGCTTTTTGTGATCGACCTTTCAGTctattt tgatgctttttttcATCAGACATGTTTACACGGGCATTAGTAGCTCTTAA GCgatcttgattttttcttttttgtttctctCTTTCTGTTTCACCAGCTC TAGCCTCAGCTTTCCTAGTCcgatcttttttgagtttttttacaGTTATT TCAGTCGCATTAGTTCCCTCTTGGTCTACtaagttttcattaaaattaat tttgttggtCTTTGACCTTAATTTGTATATTTTAGACGGTCCAGGTTGCA CATTACTATCATTATCAATAGGTCGTTTTCTCTTTTCAATGTAGCCATAA CAACGGAGACTTTGTTTTAAGGAGTTCAGAGAATCGTCGGGAATGAACAT CTTAATATACTGAACTTCAAAGCCGACTAGATCGTGCCGAAACTGTTGCA AGTAGAACTCTTTTAGATATTCCTCGAGATCCCGTTTGGTATTGAACTCG AGCAGTACGGATGTTCCTGTATTGTTGTAACAGCACATGCCCTCGGAGGT ACGGTTGTGGGAATCAAAGACATAATATCGACCGTTGTCAAACATGAAGG CAGTTCCATTACTGCAAGCTACAAAAATTCCATAGTTATATGTGGGTGGG GGGTTTAAGAAGTCAATACTGTTTCTATCTAACACTGAAACGGTCACGGG CGTTcgtaaaaattcaataatattGCTTTCGATATTTAATTGTGAGGGTA GGTCCGTCAAATCAATGTATTCGTCAATATATCCAAGCCCGCGGTACAAC TCGTTACCTAATCTAAGAATAGCGTCCAAATCGGATTTTTCCCAGTACAT TGGAAGTTTAAAATAGGAATAAATTATGGCGGTGGAGGCCATGTACATGC ATTGGGTGCCCGCTTGAGGTCCGAAAATGGCCACATTCCCCTGATTAAAG GATGCTTGGACAACTTTATGGCAGTTAAAAGGTCCAGGGTTAGTTTCAAT ATCTCCGCATGATATGAGAAGTATGCTTAGGAAGAGAGCTATAGATACTA ATCTAGATGCCTTTAAAAATTGGGAAAACCATCTACTAGATAAAGACGAA TCTATGTCAAGATGACGATATATTGAGCGGAGGTCTAGTTGGCGGGTGTT GTTAAAATTACCAATCGAAACTCGATATGCATCGGTAGAAATCATAATTA TAAAAACTGTTAGTGGGTAAAATGGGCAGGAGACaatgaaataaagaaca aaattataacagattgatttttctttttcaaaatattaaattatGTAAGC GGAGTGAGCTGAGTAAGTTAAGTAGCTTTAGTTTGCCGAATGTTTCGTAA TATAAACCAAGTGATTTGAGTATTCAAGTAGTAAGTGATCTGAGTAAGCC GATTGATCTGAGTATGCCAAGTAGTACGCTACGCTATGTGATCTAGGTAT ACCAAGTAAGCCAAGTATACTAAGTTATCTAAGTTGAAATATTTCTGACC CTTCCGCCGTACGCAAGAAGGATCGATGgacctaaaaaataaaaaaagac gaaattACGATTTTTGAAAGAACTGTACTCTTAATAAATGGCCTGGTTGT TAATTTTTAGATTTGAGACGCCCTGtgatttttcttcaatttttctgtTA TATAAACAGTTGtatataacttttgaaatatgcaT

Coding sequence (CDS) from alignment at sc0002878:7831..12915

>TCONS_00041443 ID=TCONS_00041443|Name=TCONS_00041443|organism=Clytia hemisphaerica|type=CDS|length=4593bp|location=Sequence derived from alignment at sc0002878:7831..12915 (Clytia hemisphaerica)
GAAATTTAACTCGTCATCTGATATCAGTGGTTCAATTATCTGTACAGAGT
CACCTCCGCGATAATCATTATGGTCATTTTCAATTTCGTTGTCTGTTTCT
TCTTCACTCGCATTGTTTGCTTCTTCCTCCCGAACATCGTCATTTTCTTG
TTCTCCGTAAATATCATAACCTCTTGggttttcatggaaattcaacATTG
CATCATCAACGACATCGGCAAAAGGTTCAAAGACTGCTttgtttctattt
atttcatCCAATACTTCTGGTGATAATAGTTTTTCTGTATATGTCCCTAG
TGGGCCCTTTAACTCTTCTTCGTTTCTAAAGTGATAAAACATGAACAACA
AATGGTGGGCATAGCGTTCTGGTTTTTTTTCTCTGCTCGGTACATGGTAT
CTCAGAACGCATTTAATTTTTCGTAACTTCAGGCGTTCTTTGGAATTCGA
TTTTAAGGGAAATGTCGATGGTAAGCGAAGATCGACTGCTTCTGCCTGAT
CTATTTCCTCAAGAATTTCAGGCTGGTAGTCATTTTCCACTTCCTTGTTT
TTAGAATCCAAAGAATAATTTGCCAAAAATTCTGCGTAGCAAATATGTTC
TAATGAAGGATATTTACCTTTGTAACACCTTGGAGTTGGTCTGTCTATAT
ATCGATctaacatattttttttgaaaacatttgtaTCTTCCTCATCCATG
TTTGAAATCTCATCTTGACTTTTGCATACTCGGtaacggttttctggcaa
gtTACTGTTCGCAAAAATGACTGCTGGAGATGTTCTTCTAAGCCAAATTT
CTGGAAGTACAATAGAAACAGCTTCTTGAATAGACATCTCTCTATGTGTT
CTGTAAGCTCTTGATATTGATTTCATCTTTTCTCTAAGACATTGGTTGGA
TTCTAATGCTTCTTTCGCGGCTTGTTTCATTGCTTCTGTTGATTCGTCTT
CGGATTTGGAAATGTAAGCGCACATATAAGAAACACATTTATGATAATCT
ATGACAGGCTGAATATCCATGTTAGCTTCCCAAGCACGCAATCCTTCCTC
GAAATAGTTATTCACAAAACAGGCGGATGTTGATCGTTTGTAATGTATTT
GAAAGCTTTTATCTGTAGAAATAGCTAGGTTTTCGTAATAAACTTGTTTT
TCAATTCCCAACTCTTCTAATATTTCGTTTATTGATTTTGGTTCTCTATA
GTTCTCCTTTGCTGGATCATGCACGTTATTAAATCTTGGATCAAAGTTTT
TATCAATATACTGTTTAACTGGAGATAAAATAGCTTTCCTTGTATTAAGG
ATCTCTTCTTTGTTTGGTAGGTTCTCATCTAATGGGACAGCTATGATtgt
tttttctgtaaaaaactTTCCGAAAAGATATCTACATGGCCGATTCTTAA
AAGGACGACATGATTTTGAATGACGATGTATCTGATACGTTTTTACTAAA
TCATACAGTTCACTATTTGTATCTTCTGGAAAGTCACATTTTACAAATTT
ATCAACGAACTCAGTATATTCATCAATGGTTTCATAAGTTAGTATAGGGG
CGTTCTCGATCCAGATAAGACAATGGGCGTGAGCACTACCTCTAGCTTGA
AATTCAATCCTGATAACGTGATGTTTTAGCTTACCACCTAATGCTCCTTT
TGCGATAATATGTTTAAAATAACACTCAAGACGATATTGAAAATGTCTTG
CTAAAACAACAGGGTTCGATTGCAGAATCTGTGTTCTTTCCATGTAACTC
AAAGCTCTAATTTGATCTTCTGTCATTTCTTTCCCTTTCATTTTTTGGAT
AATGTCAACTATTTCTGGCCATTTTAAATCAGCACATGACAAAGTATGAA
AAAAAGTCGGCAGTCCTAATTGTTTTACCATAGCGAGAACTTCGTAAAGA
AGTCTTTTCCAATACGCGGGAGTAcctttcaaattattcataaagCTATA
CGCATTGTCATTAGCAACTAGGTTTGAAATCGTTTCCTTGAAATTCTGAG
ACAACTGACCTGCTGTCAGCCCTTCCGTTTGAATCTTTTTCAGAGCTGTA
TTGATACTATTATTTAAGTTTAAGTGTTGTAATAATGATTGAGCATAGAA
TATGTAACCACTATCCGAGGAAAACTTTAGACTGTAGTTTAAAAGACGTT
GATTGAAATATCTAGTTGGACTTAGTTTTTCATCTCTTTCATGGTTATAC
CCTGACTCGCCAGTTGGAAATAAATGAGGATGAGCAAGCATTTCGCAATC
TTCATCACAAATTATGGGTAGGGGCTTTTTGTCTTCTCCGGGTGCTATAG
TCACATTAGAATCGTCAATAACCTGGTACGGAAGCTCGGGAACTAAAACT
GTTTCAGAAGCAGGTACGCGCAAATGATCTAAAGGATTatcctcttcttc
ttcattttcagcaGGCTTTGTTTCCTTGGATTCCCCTTCTCTCACAAAAT
CGATTTCATCATCAGTTTCATCCTGATCATCATTATTAATAATATCTATC
CAACATGCGGGGATGGAATCTAAGTTGATTTTAATGTCAGAGTACAGAGG
GTTGTTATTtttaaagtaaatcaaaacCTCTCTTACAAACTGTGGCCGTA
CAGGTTCAAAGTAGACATTAGACTTAAagctcattttctttttcagggcG
ACTCTCACTACCCCATTATTGTCCATTCCGCGGGGTAATATATTACAAAT
ATCATCTGCTTTTATTGGTACGTTACATATAGCGCCTTTCATTTTAGGGG
CTTGTCCTTTACTCATAATTGTTATTCTTTTAAACAGTAAACGTTTTGCA
ATAatgattttttccaattttcttatATCCGAAAACCTTTCTGGTAAGTT
GGTGATTTGCAAGGCATTAGCCACTGCTTGAGgaggaacttttttcttga
gtAATTTTTTGTCGCATGTTTTGCATATGTATTCTTTATTGTCGAAACTG
AGAACACGATAAGAAAAGACGTCTTCATCGACATCGTGATATTTGTTTTC
ATTAAACAAAATTACGGAAACCCTATACATAAGTCTGTTACAAATCACGC
AAATAAAGAAAGGACCTTTTCGAATGTCCGTTTTGAACGTTTTTACTCGG
CGCATCATACTGTCTTTATGAGGCAAAGCTGTTGTActagttgttttgat
ttttttgtcctTTTCATTCCttgctttttttttctcttctgttAAATTTG
CACACCTTTTTGCCTTTCGTAATCGGTCTTTCTCTCTTATTTCAAGCTTT
TGTTCTTCTGTTAGATTTGCCCTTGCTTTAGCCATCGAAGTGCGGTTTTT
TGCTCtagttttagttttttgttCCTCTGTCATTTTTGCACTAGCTGCAG
CTTTTCGTGATTTCTCTCTATTcctattttcagctttttcttcTTCCGTC
ATTTTTGCTTTAGAGGTAGCTTTTTGTGATCGACCTTTCAGTctattttg
atgctttttttcATCAGACATGTTTACACGGGCATTAGTAGCTCTTAAGC
gatcttgattttttcttttttgtttctctCTTTCTGTTTCACCAGCTCTA
GCCTCAGCTTTCCTAGTCcgatcttttttgagtttttttacaGTTATTTC
AGTCGCATTAGTTCCCTCTTGGTCTACtaagttttcattaaaattaattt
tgttggtCTTTGACCTTAATTTGTATATTTTAGACGGTCCAGGTTGCACA
TTACTATCATTATCAATAGGTCGTTTTCTCTTTTCAATGTAGCCATAACA
ACGGAGACTTTGTTTTAAGGAGTTCAGAGAATCGTCGGGAATGAACATCT
TAATATACTGAACTTCAAAGCCGACTAGATCGTGCCGAAACTGTTGCAAG
TAGAACTCTTTTAGATATTCCTCGAGATCCCGTTTGGTATTGAACTCGAG
CAGTACGGATGTTCCTGTATTGTTGTAACAGCACATGCCCTCGGAGGTAC
GGTTGTGGGAATCAAAGACATAATATCGACCGTTGTCAAACATGAAGGCA
GTTCCATTACTGCAAGCTACAAAAATTCCATAGTTATATGTGGGTGGGGG
GTTTAAGAAGTCAATACTGTTTCTATCTAACACTGAAACGGTCACGGGCG
TTcgtaaaaattcaataatattGCTTTCGATATTTAATTGTGAGGGTAGG
TCCGTCAAATCAATGTATTCGTCAATATATCCAAGCCCGCGGTACAACTC
GTTACCTAATCTAAGAATAGCGTCCAAATCGGATTTTTCCCAGTACATTG
GAAGTTTAAAATAGGAATAAATTATGGCGGTGGAGGCCATGTACATGCAT
TGGGTGCCCGCTTGAGGTCCGAAAATGGCCACATTCCCCTGATTAAAGGA
TGCTTGGACAACTTTATGGCAGTTAAAAGGTCCAGGGTTAGTTTCAATAT
CTCCGCATGATATGAGAAGTATGCTTAGGAAGAGAGCTATAGATACTAAT
CTAGATGCCTTTAAAAATTGGGAAAACCATCTACTAGATAAAGACGAATC
TATGTCAAGATGACGATATATTGAGCGGAGGTCTAGTTGGCGGGTGTTGT
TAAAATTACCAATCGAAACTCGATATGCATCGGTAGAAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025415XLOC_025415Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041443-proteinTCONS_00041443-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041443-exon-sc0002878-1491911889:7831..12915TCONS_00041443-exon-sc0002878-1491911889:7831..12915Clytia hemisphaericaexon
TCONS_00041443-exon-sc0002878-1510915933:7831..12915TCONS_00041443-exon-sc0002878-1510915933:7831..12915Clytia hemisphaericaexon
TCONS_00041443-exon-sc0002878-1575043694:7831..12915TCONS_00041443-exon-sc0002878-1575043694:7831..12915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002878supercontigsc0002878:7831..12915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.00823825 0 0.196242 0.155073 0.149671 0.21018 0.104233 0.0759465 0.0958302 0.184139 0.0871026 0.120609 0.00413155 0.00886757 0 0 0.0232036 0 0 0 0 0 0.210922 0.920297 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
IPR011989ARM-like
IPR025476Helitron_helicase-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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