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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041441 ID=TCONS_00041441|Name=TCONS_00041441|organism=Clytia hemisphaerica|type=transcript|length=1570bp
CTCCAAATTCGAGAAATTAAAATTCGTTACTTCAAATATTAGTTCTCGTA
AAGTCTTTTCATTGCACCTCTCCAtcttgatctttcttttttttcagatg
tGATAATCAAAGGATATGTTATAAATATATCTCCAGTTCGGATATCGAaa
tacaatagacctttttttaatttgacttttgaaattgaAGACAATTCATT
TGTGAAAGCAGTCTGCTATGCGCCACGGAAACATAGGCTTTTTGAAGAGG
CAGAAACTAAACGAGTTGGAGTTACTATCACCAACGCCAGTCTTTACGAA
AATGGGACTGTTAAGATTGACGAGCAAGCATCAGTGAAATGTGAGACTCT
TGGCTTTAAACCCACATATCAGCTAGAGATAACACAATTGTCTACTGTTA
TTAACGAAATTCCAATTGGTGGCTTTGTCAACGTGTGTTGTCGGGTACAG
CTGGAAGATATTGAACAGGTTAAGGTGAGTGGTGGTGGTTTTGCTAATAT
GAGGAAAGGTTATCTATGTGATTCCACGGATTATATTCGCCTTGTATTAT
GGAGGGAATATGCCACACTTTTTGATAATGGAAAAACTTATACAATTTCT
AATCTCAAAAAAAGTCTATGGAATAATACTGATGAACTGCATTCTTCTAG
TACGACAGCACACAAATTAGCTCCAGATCTTATAGAATTCAAAGAGCCTG
ATATCAGTTCTGATAACATTACAGTTAACCCTTGTTCAATCAGTGGGGCA
AAATTTACACACACAACAAAATGCCTTTTCTGTGAGGCCAAAATTTTATG
TGTTGGCTCGAACAGTGAGTGTATTAAATGTGACAAATGCGGGGGAGACT
CTCTTCTTTCATCAACCTGTCAGCAAAAATTCTGGACTTTGATACTTAAT
GAAAAGAATGTAACAACCAGAGTTGATGTCGACGCAGATATGTTGCCTGA
CATTGAAGTCGATCAGGTAAAGGCATATTTGATGTCTAACAAATTTAAAA
TTACATATCGTGCGACCTCAGGTCAAATAAATTATATTGAAATGATAAAA
ACCGAACATGGAAACGAGTCATTTCCTGCTACAAACGAATGTCAACTGGA
ATCTGATGATATTATTGACAATCAGCTAAAATCAATAGAAATGGTGGTGA
AGAAAAACCAATAAAAATGATATCTCAATATTGTTGTTTGTTACCTTGTT
GTTTTTTAAgttgatttttataatttttatgacgcgaaagaaagataaaa
agcAAATTATTTACAGAGAGAATATGATTTGGTTGACTCACAGTGCCGTG
AATTTTGGGAATTATATTTAAAACATAGTTGAATTTGATAAGAAATCTAC
CAATTTTCCTTCCCAtcaaaatttgctaattttagcATTGTTCTTACATG
TACCTCATTTAGTAgtataacttttttatttaaatgtGAATTTTAAACTC
TAAAAAGTAGTTTTGCATTTCATTCTGCATGGTGTTAATTAAGGATATAA
TTTTGCTAGGCGAAAATGTGTATTATagttttgtttgtgttttaaagaaT
ATAGGTCTATTCTTCATGCT Run BLAST on NCBI protein sequence of TCONS_00041441-protein >TCONS_00041441-protein ID=TCONS_00041441-protein|Name=TCONS_00041441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MRKGYLCDSTDYIRLVLWREYATLFDNGKTYTISNLKKSLWNNTDELHSS
STTAHKLAPDLIEFKEPDISSDNITVNPCSISGAKFTHTTKCLFCEAKIL
CVGSNSECIKCDKCGGDSLLSSTCQQKFWTLILNEKNVTTRVDVDADMLP
DIEVDQVKAYLMSNKFKITYRATSGQINYIEMIKTEHGNESFPATNECQL
ESDDIIDNQLKSIEMVVKKNQ Run BLAST on NCBI transcript from alignment at sc0002878:2087..3656 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041441 ID=TCONS_00041441|Name=TCONS_00041441|organism=Clytia hemisphaerica|type=transcript|length=1570bp|location=Sequence derived from alignment at sc0002878:2087..3656 (Clytia hemisphaerica)
AGCATGAAGAATAGACCTATAttctttaaaacacaaacaaaactATAATA
CACATTTTCGCCTAGCAAAATTATATCCTTAATTAACACCATGCAGAATG
AAATGCAAAACTACTTTTTAGAGTTTAAAATTCacatttaaataaaaaag
ttatacTACTAAATGAGGTACATGTAAGAACAATgctaaaattagcaaat
tttgaTGGGAAGGAAAATTGGTAGATTTCTTATCAAATTCAACTATGTTT
TAAATATAATTCCCAAAATTCACGGCACTGTGAGTCAACCAAATCATATT
CTCTCTGTAAATAATTTgctttttatctttctttcgcgtcataaaaatta
taaaaatcaacTTAAAAAACAACAAGGTAACAAACAACAATATTGAGATA
TCATTTTTATTGGTTTTTCTTCACCACCATTTCTATTGATTTTAGCTGAT
TGTCAATAATATCATCAGATTCCAGTTGACATTCGTTTGTAGCAGGAAAT
GACTCGTTTCCATGTTCGGTTTTTATCATTTCAATATAATTTATTTGACC
TGAGGTCGCACGATATGTAATTTTAAATTTGTTAGACATCAAATATGCCT
TTACCTGATCGACTTCAATGTCAGGCAACATATCTGCGTCGACATCAACT
CTGGTTGTTACATTCTTTTCATTAAGTATCAAAGTCCAGAATTTTTGCTG
ACAGGTTGATGAAAGAAGAGAGTCTCCCCCGCATTTGTCACATTTAATAC
ACTCACTGTTCGAGCCAACACATAAAATTTTGGCCTCACAGAAAAGGCAT
TTTGTTGTGTGTGTAAATTTTGCCCCACTGATTGAACAAGGGTTAACTGT
AATGTTATCAGAACTGATATCAGGCTCTTTGAATTCTATAAGATCTGGAG
CTAATTTGTGTGCTGTCGTACTAGAAGAATGCAGTTCATCAGTATTATTC
CATAGACTTTTTTTGAGATTAGAAATTGTATAAGTTTTTCCATTATCAAA
AAGTGTGGCATATTCCCTCCATAATACAAGGCGAATATAATCCGTGGAAT
CACATAGATAACCTTTCCTCATATTAGCAAAACCACCACCACTCACCTTA
ACCTGTTCAATATCTTCCAGCTGTACCCGACAACACACGTTGACAAAGCC
ACCAATTGGAATTTCGTTAATAACAGTAGACAATTGTGTTATCTCTAGCT
GATATGTGGGTTTAAAGCCAAGAGTCTCACATTTCACTGATGCTTGCTCG
TCAATCTTAACAGTCCCATTTTCGTAAAGACTGGCGTTGGTGATAGTAAC
TCCAACTCGTTTAGTTTCTGCCTCTTCAAAAAGCCTATGTTTCCGTGGCG
CATAGCAGACTGCTTTCACAAATGAATTGTCTtcaatttcaaaagtcaaa
ttaaaaaaaggtctattgtattTCGATATCCGAACTGGAGATATATTTAT
AACATATCCTTTGATTATCacatctgaaaaaaaagaaagatcaagaTGGA
GAGGTGCAATGAAAAGACTTTACGAGAACTAATATTTGAAGTAACGAATT
TTAATTTCTCGAATTTGGAG Coding sequence (CDS) from alignment at sc0002878:2087..3656 >TCONS_00041441 ID=TCONS_00041441|Name=TCONS_00041441|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0002878:2087..3656 (Clytia hemisphaerica)
TTATTGGTTTTTCTTCACCACCATTTCTATTGATTTTAGCTGATTGTCAA
TAATATCATCAGATTCCAGTTGACATTCGTTTGTAGCAGGAAATGACTCG
TTTCCATGTTCGGTTTTTATCATTTCAATATAATTTATTTGACCTGAGGT
CGCACGATATGTAATTTTAAATTTGTTAGACATCAAATATGCCTTTACCT
GATCGACTTCAATGTCAGGCAACATATCTGCGTCGACATCAACTCTGGTT
GTTACATTCTTTTCATTAAGTATCAAAGTCCAGAATTTTTGCTGACAGGT
TGATGAAAGAAGAGAGTCTCCCCCGCATTTGTCACATTTAATACACTCAC
TGTTCGAGCCAACACATAAAATTTTGGCCTCACAGAAAAGGCATTTTGTT
GTGTGTGTAAATTTTGCCCCACTGATTGAACAAGGGTTAACTGTAATGTT
ATCAGAACTGATATCAGGCTCTTTGAATTCTATAAGATCTGGAGCTAATT
TGTGTGCTGTCGTACTAGAAGAATGCAGTTCATCAGTATTATTCCATAGA
CTTTTTTTGAGATTAGAAATTGTATAAGTTTTTCCATTATCAAAAAGTGT
GGCATATTCCCTCCATAATACAAGGCGAATATAATCCGTGGAATCACATA
GATAACCTTTCCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041441-exon-sc0002878-1491911889:2087..3656 | TCONS_00041441-exon-sc0002878-1491911889:2087..3656 | Clytia hemisphaerica | exon |
| TCONS_00041441-exon-sc0002878-1510915933:2087..3656 | TCONS_00041441-exon-sc0002878-1510915933:2087..3656 | Clytia hemisphaerica | exon |
| TCONS_00041441-exon-sc0002878-1575043694:2087..3656 | TCONS_00041441-exon-sc0002878-1575043694:2087..3656 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002878 | supercontig | sc0002878:2087..3656 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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