TCONS_00041434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041434
Unique NameTCONS_00041434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041434 ID=TCONS_00041434|Name=TCONS_00041434|organism=Clytia hemisphaerica|type=transcript|length=730bp
TGCATTGTCGTTTCGATTTGTTTTGACTGGTGTGAGGCTAACTCGATTGA
TTGCCCAATGTCAATAACTTTCTGAAGTGTGAGGTTTTTCTCTTGAAGAA
ACTTGGTTCGGTGTTTCGAGGATCTGCAGGATGCGATTACCTGGTCTCGG
ATTTGATCGTCTGTAGATTCCCCATATTCACAGTGAGTGGTAAGTTTTCT
CAGTCTAGTAATATATTGTTCAATACTCTCTTGGGGCTCTTGTTTTGCAT
TGTGAAATACTGATCTCTCATATGGTACGTTCTTCTTTACAGAGAAATGA
GCGTCAAGGGCTGCTATAGCATGATCAAAAGTGTCACCTTGATTCGGTAg
agtttcaaatatttcctgtGATGCAGTGCCCATTAGGTGGAGAAGAAGTG
ATCTTTTTCGATTGTCATCGTTGACTGCAGCAGCTGCTACGAAGAAGGTG
AAGGATTTCTTCCATTTCTCCCATCTTGATGCAACGGTGTTCTGATTTCC
CATTGGGTCGAACGGTGGAACTGCAGGAATGTTCAGACCAGCCATGTTGG
AATGAACTATGAGATTTGTGATGAGTGATTATAAAGTCAGTTTGTGTAGT
TTTGGTCTTGTTTCACCATAAACTATTGAGACTGTTGTGGCAGTGGAGTC
TTTTTAAATCTTCGTCGCCATATGTTATGTTCTAACTTGACTTGATTGGC
AAGTACTAGCTGGATTAAATGAATGAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00041434-protein

>TCONS_00041434-protein ID=TCONS_00041434-protein|Name=TCONS_00041434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MAGLNIPAVPPFDPMGNQNTVASRWEKWKKSFTFFVAAAAVNDDNRKRSL
LLHLMGTASQEIFETLPNQGDTFDHAIAALDAHFSVKKNVPYERSVFHNA
KQEPQESIEQYITRLRKLTTHCEYGESTDDQIRDQVIASCRSSKHRTKFL
QEKNLTLQKVIDIGQSIELASHQSKQIETTM
Run BLAST on NCBI

transcript from alignment at sc0002872:3863..4592

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041434 ID=TCONS_00041434|Name=TCONS_00041434|organism=Clytia hemisphaerica|type=transcript|length=730bp|location=Sequence derived from alignment at sc0002872:3863..4592 (Clytia hemisphaerica)
GTTTTCATTCATTTAATCCAGCTAGTACTTGCCAATCAAGTCAAGTTAGA
ACATAACATATGGCGACGAAGATTTAAAAAGACTCCACTGCCACAACAGT
CTCAATAGTTTATGGTGAAACAAGACCAAAACTACACAAACTGACTTTAT
AATCACTCATCACAAATCTCATAGTTCATTCCAACATGGCTGGTCTGAAC
ATTCCTGCAGTTCCACCGTTCGACCCAATGGGAAATCAGAACACCGTTGC
ATCAAGATGGGAGAAATGGAAGAAATCCTTCACCTTCTTCGTAGCAGCTG
CTGCAGTCAACGATGACAATCGAAAAAGATCACTTCTTCTCCACCTAATG
GGCACTGCATCacaggaaatatttgaaactcTACCGAATCAAGGTGACAC
TTTTGATCATGCTATAGCAGCCCTTGACGCTCATTTCTCTGTAAAGAAGA
ACGTACCATATGAGAGATCAGTATTTCACAATGCAAAACAAGAGCCCCAA
GAGAGTATTGAACAATATATTACTAGACTGAGAAAACTTACCACTCACTG
TGAATATGGGGAATCTACAGACGATCAAATCCGAGACCAGGTAATCGCAT
CCTGCAGATCCTCGAAACACCGAACCAAGTTTCTTCAAGAGAAAAACCTC
ACACTTCAGAAAGTTATTGACATTGGGCAATCAATCGAGTTAGCCTCACA
CCAGTCAAAACAAATCGAAACGACAATGCA

Coding sequence (CDS) from alignment at sc0002872:3863..4592

>TCONS_00041434 ID=TCONS_00041434|Name=TCONS_00041434|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0002872:3863..4592 (Clytia hemisphaerica)
ATGGCTGGTCTGAACATTCCTGCAGTTCCACCGTTCGACCCAATGGGAAA
TCAGAACACCGTTGCATCAAGATGGGAGAAATGGAAGAAATCCTTCACCT
TCTTCGTAGCAGCTGCTGCAGTCAACGATGACAATCGAAAAAGATCACTT
CTTCTCCACCTAATGGGCACTGCATCacaggaaatatttgaaactcTACC
GAATCAAGGTGACACTTTTGATCATGCTATAGCAGCCCTTGACGCTCATT
TCTCTGTAAAGAAGAACGTACCATATGAGAGATCAGTATTTCACAATGCA
AAACAAGAGCCCCAAGAGAGTATTGAACAATATATTACTAGACTGAGAAA
ACTTACCACTCACTGTGAATATGGGGAATCTACAGACGATCAAATCCGAG
ACCAGGTAATCGCATCCTGCAGATCCTCGAAACACCGAACCAAGTTTCTT
CAAGAGAAAAACCTCACACTTCAGAAAGTTATTGACATTGGGCAATCAAT
CGAGTTAGCCTCACACCAGTCAAAACAAATCGAAACGACAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025407XLOC_025407Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041434-proteinTCONS_00041434-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041434-exon-sc0002872-1491911889:3863..4592TCONS_00041434-exon-sc0002872-1491911889:3863..4592Clytia hemisphaericaexon
TCONS_00041434-exon-sc0002872-1510915933:3863..4592TCONS_00041434-exon-sc0002872-1510915933:3863..4592Clytia hemisphaericaexon
TCONS_00041434-exon-sc0002872-1575043694:3863..4592TCONS_00041434-exon-sc0002872-1575043694:3863..4592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002872supercontigsc0002872:3863..4592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.408573	0.664038	1.15652	0.150863	3.58139	2.03184	0.964545	0.983531	0.0573827	0.355389	0	0	6.02333	2.58677	0.386669	0.331964	0.153357	0.314372	3.98128	8.48375	0.197516	0.289024	0.312308	0.567866	0.0731111	0.32625	0.466862	0.0996496	0	0.154009
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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