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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041432 ID=TCONS_00041432|Name=TCONS_00041432|organism=Clytia hemisphaerica|type=transcript|length=1102bp
AAAAGAGCCAGATTTCAACCGATATGAATACATGCACCAATACCTTCTTT
CAAGAGATGACCTGTTTAATGAAACTTGCATGAAGGATATAACTATGATC
AATATCTATATAACCGAAGGCATTCATGatgtttattttccattttttgt
tgGCTTATTGAAAAAAGTGAATGCTTTAcgtgaaattaaaaagaaacaac
cGTTGAGGATCAGCTTCAGGACCTTTAccactttttttgattttattact
aATGCTCGTAAAAAAACGATGAATGGAATGTTTGGCCCTGGTTTGATGAT
GGATGTTTGGAAACCAATAGACAGTGATGCTGTTTCCCTCCATATCAAAA
TTGAGGAATGGGAACGCAATGATTATGAATGTAATATTTTATCAGAACCT
AACGTCAAACATTACCGATATGCATCTTTGCGCTCCTCAGATTGTCTCAA
TgctgtgaaaatgaaaacatttgaatCAATGGATGATCTTATAGAAATGA
TGAACAAAGATATTTGTAAAAGACGAAAATTCAATTGAAACATCTTTGTC
ACCTCTCCAACCTGTTAATAGTGTTAATTATTTTGTAGAactcatttgtt
tttttttattaaaatcattttacctcggaggtcctatgaattaaacCGAt
ttccgtccgtccgttcgcttgtctgttaccagcttttttggtttttctga
ttttttacacaatgatgcaaaatgacaatatccAAAATGtgactagtctg
aatcgcagacctctattgTGACGGCCGCTGGCcttgttttgatatgtttc
aaTTTCATGTTACGTCATTAGTCACTTGGGATTGCGTCTCTCGTTGTCTT
CAGCGTATTCAATTTTATTGCGTCTTTTGTATGTCACCTTCGTATTGTTT
ATAATGTATATAATTAGGTCATTAGGGAATTGTAGAATTTTGAGGCGTAG
GAATTAAATTGTAAACGAATTTTCTACATTTATATAACAGTAGTAATGTT
GTGTATGTGATGTGAAgtggtgaaggcttcttcgtaaaagcgaaagacat
gtatctatttttcggatccggcatgcgggaatagtgtcaggacctgcagg
cg Run BLAST on NCBI protein sequence of TCONS_00041432-protein >TCONS_00041432-protein ID=TCONS_00041432-protein|Name=TCONS_00041432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
KEPDFNRYEYMHQYLLSRDDLFNETCMKDITMINIYITEGIHDVYFPFFV
GLLKKVNALREIKKKQPLRISFRTFTTFFDFITNARKKTMNGMFGPGLMM
DVWKPIDSDAVSLHIKIEEWERNDYECNILSEPNVKHYRYASLRSSDCLN
AVKMKTFESMDDLIEMMNKDICKRRKFN Run BLAST on NCBI transcript from alignment at sc0002867:17715..18816 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041432 ID=TCONS_00041432|Name=TCONS_00041432|organism=Clytia hemisphaerica|type=transcript|length=1102bp|location=Sequence derived from alignment at sc0002867:17715..18816 (Clytia hemisphaerica)
cgcctgcaggtcctgacactattcccgcatgccggatccgaaaaatagat
acatgtctttcgcttttacgaagaagccttcaccacTTCACATCACATAC
ACAACATTACTACTGTTATATAAATGTAGAAAATTCGTTTACAATTTAAT
TCCTACGCCTCAAAATTCTACAATTCCCTAATGACCTAATTATATACATT
ATAAACAATACGAAGGTGACATACAAAAGACGCAATAAAATTGAATACGC
TGAAGACAACGAGAGACGCAATCCCAAGTGACTAATGACGTAACATGAAA
ttgaaacatatcaaaacaagGCCAGCGGCCGTCAcaatagaggtctgcga
ttcagactagtcaCATTTTggatattgtcattttgcatcattgtgtaaaa
aatcagaaaaaccaaaaaagctggtaacagacaagcgaacggacggacgg
aaaTCGgtttaattcataggacctccgaggtaaaatgattttaataaaaa
aaaacaaatgagtTCTACAAAATAATTAACACTATTAACAGGTTGGAGAG
GTGACAAAGATGTTTCAATTGAATTTTCGTCTTTTACAAATATCTTTGTT
CATCATTTCTATAAGATCATCCATTGattcaaatgttttcattttcacag
cATTGAGACAATCTGAGGAGCGCAAAGATGCATATCGGTAATGTTTGACG
TTAGGTTCTGATAAAATATTACATTCATAATCATTGCGTTCCCATTCCTC
AATTTTGATATGGAGGGAAACAGCATCACTGTCTATTGGTTTCCAAACAT
CCATCATCAAACCAGGGCCAAACATTCCATTCATCGTTTTTTTACGAGCA
TtagtaataaaatcaaaaaaagtggTAAAGGTCCTGAAGCTGATCCTCAA
CggttgtttctttttaatttcacgTAAAGCATTCACTTTTTTCAATAAGC
caacaaaaaatggaaaataaacatCATGAATGCCTTCGGTTATATAGATA
TTGATCATAGTTATATCCTTCATGCAAGTTTCATTAAACAGGTCATCTCT
TGAAAGAAGGTATTGGTGCATGTATTCATATCGGTTGAAATCTGGCTCTT
TT Coding sequence (CDS) from alignment at sc0002867:17715..18816 >TCONS_00041432 ID=TCONS_00041432|Name=TCONS_00041432|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0002867:17715..18816 (Clytia hemisphaerica)
TCAATTGAATTTTCGTCTTTTACAAATATCTTTGTTCATCATTTCTATAA
GATCATCCATTGattcaaatgttttcattttcacagcATTGAGACAATCT
GAGGAGCGCAAAGATGCATATCGGTAATGTTTGACGTTAGGTTCTGATAA
AATATTACATTCATAATCATTGCGTTCCCATTCCTCAATTTTGATATGGA
GGGAAACAGCATCACTGTCTATTGGTTTCCAAACATCCATCATCAAACCA
GGGCCAAACATTCCATTCATCGTTTTTTTACGAGCATtagtaataaaatc
aaaaaaagtggTAAAGGTCCTGAAGCTGATCCTCAACggttgtttctttt
taatttcacgTAAAGCATTCACTTTTTTCAATAAGCcaacaaaaaatgga
aaataaacatCATGAATGCCTTCGGTTATATAGATATTGATCATAGTTAT
ATCCTTCATGCAAGTTTCATTAAACAGGTCATCTCTTGAAAGAAGGTATT
GGTGCATGTATTCATATCGGTTGAAATCTGGCTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041432-exon-sc0002867-1491911889:17715..18816 | TCONS_00041432-exon-sc0002867-1491911889:17715..18816 | Clytia hemisphaerica | exon |
| TCONS_00041432-exon-sc0002867-1510915933:17715..18816 | TCONS_00041432-exon-sc0002867-1510915933:17715..18816 | Clytia hemisphaerica | exon |
| TCONS_00041432-exon-sc0002867-1575043694:17715..18816 | TCONS_00041432-exon-sc0002867-1575043694:17715..18816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002867 | supercontig | sc0002867:17715..18816 . |
Blast
The following BLAST results are available for this feature:
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